Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GYM71_RS07500 Genome accession   NZ_CP048268
Coordinates   1556163..1557539 (-) Length   458 a.a.
NCBI ID   WP_220220006.1    Uniprot ID   -
Organism   Lactobacillus panisapium strain ESL0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1551163..1562539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM71_RS07480 (GYM71_07455) - 1551482..1551925 (-) 444 WP_220220003.1 Mini-ribonuclease 3 -
  GYM71_RS07485 (GYM71_07460) cysS 1551918..1553342 (-) 1425 WP_220220004.1 cysteine--tRNA ligase -
  GYM71_RS07490 (GYM71_07465) - 1553679..1554509 (+) 831 WP_220220005.1 SDR family oxidoreductase -
  GYM71_RS07495 (GYM71_07470) gltX 1554588..1556087 (-) 1500 WP_103752441.1 glutamate--tRNA ligase -
  GYM71_RS07500 (GYM71_07475) radA 1556163..1557539 (-) 1377 WP_220220006.1 DNA repair protein RadA Machinery gene
  GYM71_RS07505 (GYM71_07480) - 1557539..1558087 (-) 549 WP_220220007.1 dUTP diphosphatase -
  GYM71_RS07510 (GYM71_07485) - 1558339..1558641 (+) 303 WP_220220008.1 hypothetical protein -
  GYM71_RS07515 (GYM71_07490) pepC 1558761..1560107 (+) 1347 WP_220220009.1 aminopeptidase C -
  GYM71_RS07520 (GYM71_07495) galT 1560177..1561655 (-) 1479 WP_220220010.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50003.81 Da        Isoelectric Point: 7.0887

>NTDB_id=420352 GYM71_RS07500 WP_220220006.1 1556163..1557539(-) (radA) [Lactobacillus panisapium strain ESL0416]
MAKIKTKYKCHSCGYISASYLGRCPNCGAWNQFEKETETVQARSTKGSPSRLIKKTGINEPVKITAVKAEKEERIKTSMD
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELSATYRVLYVSGEESANQIKLRADRLGLSGNEMMLYPETDMEDI
RQQIDTLKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNKGLQEVTNPSAIFLDERLPNSTGSAIVVSLEGTRPILAEIQALVTPTA
FGYAKRTTSGIDFNRAGLLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVVMAIASSYKNEEILPTDCFVGEVGL
TGEVRRVNQIDARIKEAAKTGFKRIFIPKHNMRASLQNLGIEVIPVASIPQALKLVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=420352 GYM71_RS07500 WP_220220006.1 1556163..1557539(-) (radA) [Lactobacillus panisapium strain ESL0416]
ATGGCGAAGATTAAAACTAAGTACAAATGTCATTCCTGTGGTTATATTTCTGCCAGTTATTTGGGCCGCTGTCCTAATTG
CGGTGCTTGGAATCAGTTTGAAAAAGAGACTGAAACAGTCCAAGCTCGTTCCACTAAGGGCAGTCCGAGCCGGTTAATTA
AGAAAACTGGGATTAATGAACCAGTTAAGATTACCGCTGTTAAGGCTGAAAAAGAAGAGCGGATCAAAACGAGCATGGAT
GAATTAAACCGTGTTTTAGGTGGTGGAATAGTACCAGGCTCATTGGTCTTAATCGGTGGAGATCCCGGAATCGGGAAATC
AACTTTAATGTTACAAATCATGAGTGAATTGTCCGCAACCTACCGGGTTTTATACGTATCCGGTGAGGAATCTGCTAATC
AGATCAAATTGCGCGCAGACCGGTTGGGTCTTAGTGGTAATGAGATGATGCTTTATCCAGAAACTGATATGGAGGATATT
AGGCAACAGATTGACACCCTTAAACCCGATTTTGTCGTAATCGACTCGATTCAAACGATGAACGAGCCTAGTCTTGATTC
AATGACCGGTTCGGCCTCGCAGGTACGTGAAGTGACCAGTGAATTAATGAAAATCGCGAAAATGGATGCGATTACGGTTT
TTGTGATCGGGCACGTTACTAAAGAAGGTGCCATTGCGGGTCCCAAGATTCTTGAGCACATGGTTGACACGGTTCTGTAT
TTTGAAGGCGATGAGCATCATGCGTACCGAATTCTCCATTCGGTTAAAAATCGTTTTGGTGCTGCCAATGAAATCGGGAT
GTTTGAAATGGTCAATAAGGGGCTGCAAGAAGTAACCAACCCGTCAGCAATCTTTCTTGATGAGCGCTTGCCAAATTCAA
CCGGTTCGGCCATTGTCGTATCACTAGAAGGTACTCGCCCAATATTAGCTGAAATTCAGGCACTGGTTACACCAACAGCC
TTTGGCTATGCGAAAAGAACAACTTCTGGAATTGACTTTAACCGCGCGGGCTTATTATTAGCGGTGCTAGAAAAAAGGGG
CAATTTAATGCTCCAAAACCAGGATGTCTACTTAACAGCTACTGGTGGTATTCGGTTAAATGAACCGGCTGTCGACTTAG
CAGTAGTAATGGCAATTGCTTCCAGCTATAAAAATGAAGAAATTTTACCGACAGATTGTTTTGTTGGTGAAGTTGGTTTA
ACCGGTGAGGTGCGTCGGGTCAATCAAATCGATGCCCGCATTAAAGAAGCTGCTAAAACAGGTTTTAAGCGCATTTTTAT
TCCTAAACACAACATGCGGGCTAGTCTGCAGAACCTTGGCATTGAAGTGATACCAGTGGCTAGCATCCCGCAGGCATTGA
AATTGGTTTTAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(69-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

59.081

99.782

0.59
  radA Streptococcus mitis NCTC 12261

59.081

99.782

0.59
  radA Streptococcus pneumoniae Rx1

59.081

99.782

0.59
  radA Streptococcus pneumoniae D39

59.081

99.782

0.59
  radA Streptococcus pneumoniae R6

59.081

99.782

0.59
  radA Streptococcus pneumoniae TIGR4

59.081

99.782

0.59
  radA Bacillus subtilis subsp. subtilis str. 168

56.645

100

0.568

Multiple sequence alignment