Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GYN04_RS05270 Genome accession   NZ_CP048254
Coordinates   1019737..1020198 (+) Length   153 a.a.
NCBI ID   WP_003688187.1    Uniprot ID   A0AA44U815
Organism   Neisseria gonorrhoeae strain CT530     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014737..1025198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS05235 (GYN04_05115) - 1014770..1015984 (-) 1215 WP_003695054.1 pyridoxal phosphate-dependent aminotransferase -
  GYN04_RS05240 (GYN04_05120) - 1016073..1016282 (-) 210 WP_003688192.1 4-oxalocrotonate tautomerase family protein -
  GYN04_RS05245 (GYN04_05125) - 1016474..1017280 (+) 807 WP_003704212.1 DUF4198 domain-containing protein -
  GYN04_RS11940 (GYN04_05130) - 1017340..1018559 (-) 1220 Protein_1031 Glu/Leu/Phe/Val dehydrogenase -
  GYN04_RS05265 (GYN04_05135) - 1018954..1019664 (+) 711 WP_003688188.1 phosphoglycolate phosphatase -
  GYN04_RS05270 (GYN04_05140) recX 1019737..1020198 (+) 462 WP_003688187.1 recombination regulator RecX Regulator
  GYN04_RS05275 - 1020272..1020433 (+) 162 WP_010358395.1 hypothetical protein -
  GYN04_RS05280 (GYN04_05145) - 1020586..1021068 (+) 483 WP_003688183.1 acyl-CoA thioesterase -
  GYN04_RS05285 (GYN04_05150) - 1021466..1022479 (-) 1014 WP_025455876.1 peptidoglycan DD-metalloendopeptidase family protein -
  GYN04_RS05290 (GYN04_05155) surE 1022581..1023327 (-) 747 WP_003688178.1 5'/3'-nucleotidase SurE -
  GYN04_RS05295 (GYN04_05160) - 1023344..1024900 (-) 1557 WP_012503518.1 TerC family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17745.13 Da        Isoelectric Point: 10.4361

>NTDB_id=420239 GYN04_RS05270 WP_003688187.1 1019737..1020198(+) (recX) [Neisseria gonorrhoeae strain CT530]
MKPQKSLRARAMDILSRQEVSRIGLKRKLAPHAESEEELENVLNEFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQ
QGIDEKTSRNLLPDRSSEKQAAIAVLRKKFKHPAANLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDSC

Nucleotide


Download         Length: 462 bp        

>NTDB_id=420239 GYN04_RS05270 WP_003688187.1 1019737..1020198(+) (recX) [Neisseria gonorrhoeae strain CT530]
ATGAAACCGCAAAAATCCCTACGCGCCCGCGCGATGGACATCCTCTCGCGCCAAGAAGTCAGCCGCATCGGTCTGAAACG
CAAACTTGCACCGCACGCCGAAAGCGAAGAGGAGTTGGAAAACGTGTTAAACGAATTTGCCGAACGCAACTGGCAGTCGG
ATTTGCGCTACGCCGAAGCCTATATCCGCAGCAAAAGCCGCAAACACGGTTCATTGAGGCTGAAACAGGCTTTGGCGCAA
CAGGGCATAGATGAAAAAACCAGCCGCAACCTGCTTCCCGACCGCTCAAGCGAAAAGCAAGCCGCCATAGCCGTGTTGCG
TAAAAAATTCAAACATCCCGCCGCCAACCTCAAAGAAAAACAAAAACAGGCGCGTTTCCTCGCCTATCGCGGTTTTGATG
CCGATACCGTTCAGACGGCATTGAAACACGCTTGGGACGAAAATTGGGAAGACAGCTGCTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

100

100

1

Multiple sequence alignment