Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | GYN04_RS03970 | Genome accession | NZ_CP048254 |
| Coordinates | 769110..770855 (+) | Length | 581 a.a. |
| NCBI ID | WP_192214676.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain CT530 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 718342..792655 | 769110..770855 | within | 0 |
| IS/Tn | 771542..772543 | 769110..770855 | flank | 687 |
Gene organization within MGE regions
Location: 718342..792655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYN04_RS03680 (GYN04_03580) | pgl | 719028..719723 (+) | 696 | WP_003688731.1 | 6-phosphogluconolactonase | - |
| GYN04_RS03685 (GYN04_03585) | - | 719704..720690 (+) | 987 | WP_003688729.1 | glucokinase | - |
| GYN04_RS03690 (GYN04_03590) | hexR | 720739..721587 (+) | 849 | WP_003688727.1 | DNA-binding transcriptional regulator HexR | - |
| GYN04_RS03695 (GYN04_03595) | pgi | 721813..723459 (+) | 1647 | WP_003691225.1 | glucose-6-phosphate isomerase | - |
| GYN04_RS11905 | - | 724237..724689 (+) | 453 | WP_025455797.1 | DUF1311 domain-containing protein | - |
| GYN04_RS03705 | - | 724734..724874 (+) | 141 | WP_003697130.1 | hypothetical protein | - |
| GYN04_RS03710 (GYN04_03605) | - | 724979..725362 (+) | 384 | WP_003691223.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| GYN04_RS11910 | - | 725446..725580 (-) | 135 | Protein_728 | DNA helicase UvrD | - |
| GYN04_RS11915 | - | 725681..725845 (-) | 165 | Protein_729 | DNA helicase UvrD | - |
| GYN04_RS03725 (GYN04_03610) | - | 725824..726437 (-) | 614 | Protein_730 | hypothetical protein | - |
| GYN04_RS11920 (GYN04_03615) | - | 726522..726801 (+) | 280 | Protein_731 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GYN04_RS03735 (GYN04_03620) | - | 726809..727120 (+) | 312 | WP_012503658.1 | HigA family addiction module antitoxin | - |
| GYN04_RS03740 (GYN04_03625) | - | 727136..727465 (-) | 330 | WP_003691215.1 | hypothetical protein | - |
| GYN04_RS03745 (GYN04_03630) | - | 727577..729366 (-) | 1790 | Protein_734 | pyocin knob domain-containing protein | - |
| GYN04_RS03755 | - | 729462..729764 (-) | 303 | WP_003691213.1 | hypothetical protein | - |
| GYN04_RS03760 (GYN04_03640) | - | 729804..730298 (-) | 495 | WP_228547146.1 | phage tail protein | - |
| GYN04_RS03765 (GYN04_03645) | - | 730183..731238 (-) | 1056 | WP_003691212.1 | baseplate J/gp47 family protein | - |
| GYN04_RS03770 (GYN04_03650) | - | 731259..731585 (-) | 327 | WP_003688709.1 | GPW/gp25 family protein | - |
| GYN04_RS03775 (GYN04_03655) | - | 731582..732106 (-) | 525 | WP_010360161.1 | phage baseplate assembly protein V | - |
| GYN04_RS03780 (GYN04_03660) | - | 732291..732503 (-) | 213 | WP_002243493.1 | helix-turn-helix transcriptional regulator | - |
| GYN04_RS03785 (GYN04_03665) | - | 732558..733211 (-) | 654 | WP_250328402.1 | IS1595 family transposase | - |
| GYN04_RS03790 (GYN04_03670) | - | 733233..733517 (-) | 285 | WP_003706224.1 | hypothetical protein | - |
| GYN04_RS03795 (GYN04_03675) | - | 733554..733817 (-) | 264 | WP_003688704.1 | hypothetical protein | - |
| GYN04_RS03800 | - | 733837..734085 (-) | 249 | WP_003695320.1 | hypothetical protein | - |
| GYN04_RS03805 (GYN04_03680) | - | 734046..735116 (-) | 1071 | WP_050169458.1 | integrase arm-type DNA-binding domain-containing protein | - |
| GYN04_RS03810 (GYN04_03685) | - | 735325..736104 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| GYN04_RS03815 (GYN04_03690) | dinB | 737004..738062 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| GYN04_RS03820 (GYN04_03695) | rep | 738132..740147 (-) | 2016 | WP_003704006.1 | DNA helicase Rep | - |
| GYN04_RS03825 (GYN04_03700) | aroD | 740167..740931 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| GYN04_RS03830 (GYN04_03705) | recA | 741131..742177 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| GYN04_RS03835 (GYN04_03710) | - | 742830..743165 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| GYN04_RS03840 (GYN04_03715) | dnaX | 743246..745369 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| GYN04_RS03845 (GYN04_03720) | mutL | 745464..747440 (-) | 1977 | WP_003704011.1 | DNA mismatch repair endonuclease MutL | - |
| GYN04_RS03850 (GYN04_03725) | - | 747584..747769 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| GYN04_RS03855 (GYN04_03730) | - | 747780..748448 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| GYN04_RS03860 (GYN04_03735) | - | 748448..749161 (+) | 714 | WP_003688685.1 | tol-pal system YbgF family protein | - |
| GYN04_RS03865 (GYN04_03740) | purE | 749209..749694 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| GYN04_RS03870 (GYN04_03745) | - | 749786..750597 (-) | 812 | Protein_758 | transposase | - |
| GYN04_RS03875 (GYN04_03750) | - | 750968..751333 (+) | 366 | Protein_759 | transposase | - |
| GYN04_RS03880 (GYN04_03755) | - | 751496..752404 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| GYN04_RS03885 (GYN04_03760) | - | 752560..753216 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| GYN04_RS03890 (GYN04_03765) | - | 753213..754982 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| GYN04_RS03895 (GYN04_03770) | - | 755189..755803 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| GYN04_RS03900 (GYN04_03775) | - | 755966..756583 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| GYN04_RS03905 (GYN04_03780) | - | 756591..757454 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| GYN04_RS03910 (GYN04_03785) | - | 757467..757901 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| GYN04_RS03915 (GYN04_03790) | rpe | 758047..758730 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| GYN04_RS03920 (GYN04_03795) | ruvB | 758975..760006 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| GYN04_RS03925 (GYN04_03800) | - | 760088..760396 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| GYN04_RS03930 (GYN04_03805) | - | 760814..762046 (-) | 1233 | WP_003695301.1 | multifunctional CCA addition/repair protein | - |
| GYN04_RS03935 (GYN04_03810) | - | 762125..763753 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| GYN04_RS03940 (GYN04_03815) | - | 763903..764277 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| GYN04_RS03945 (GYN04_03820) | - | 764326..765864 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| GYN04_RS03950 (GYN04_03825) | recR | 765931..766548 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| GYN04_RS03955 (GYN04_03830) | - | 766604..766882 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| GYN04_RS03960 (GYN04_03835) | - | 767108..768355 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| GYN04_RS03965 (GYN04_03840) | lolD | 768348..769043 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| GYN04_RS03970 (GYN04_03845) | recD | 769110..770855 (+) | 1746 | WP_192214676.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| GYN04_RS03975 (GYN04_03850) | - | 770927..771573 (-) | 647 | Protein_779 | class I SAM-dependent methyltransferase | - |
| GYN04_RS03980 (GYN04_03855) | - | 771581..772543 (+) | 963 | WP_048596855.1 | IS110 family transposase | - |
| GYN04_RS03985 (GYN04_03860) | - | 772676..773131 (-) | 456 | Protein_781 | methyltransferase | - |
| GYN04_RS03990 (GYN04_03865) | lon | 773383..775845 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| GYN04_RS03995 (GYN04_03870) | - | 776027..776296 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| GYN04_RS04000 (GYN04_03875) | - | 776472..776906 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| GYN04_RS04005 (GYN04_03880) | - | 776899..778206 (-) | 1308 | WP_003688637.1 | homoserine dehydrogenase | - |
| GYN04_RS04010 (GYN04_03885) | - | 778402..778773 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| GYN04_RS04015 (GYN04_03890) | - | 778850..780772 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| GYN04_RS04020 (GYN04_03895) | - | 780735..781154 (+) | 420 | WP_229692939.1 | DUF4124 domain-containing protein | - |
| GYN04_RS04025 (GYN04_03900) | - | 781245..781757 (+) | 513 | WP_003688633.1 | hypothetical protein | - |
| GYN04_RS04030 (GYN04_03905) | - | 782133..782315 (-) | 183 | WP_003704052.1 | hypothetical protein | - |
| GYN04_RS04035 | - | 782315..782650 (+) | 336 | WP_017147061.1 | hypothetical protein | - |
| GYN04_RS04040 (GYN04_03915) | ung | 782687..783346 (-) | 660 | WP_003688628.1 | uracil-DNA glycosylase | - |
| GYN04_RS04045 (GYN04_03920) | - | 783427..783834 (+) | 408 | WP_010358123.1 | NfeD family protein | - |
| GYN04_RS04050 (GYN04_03925) | - | 783849..784796 (+) | 948 | WP_003688626.1 | stomatin-like protein | - |
| GYN04_RS04055 (GYN04_03930) | - | 784903..785973 (-) | 1071 | WP_003697066.1 | AI-2E family transporter | - |
| GYN04_RS04060 (GYN04_03935) | - | 786158..786433 (+) | 276 | WP_003691180.1 | YbeD family protein | - |
| GYN04_RS04065 (GYN04_03940) | lipB | 786435..787058 (+) | 624 | WP_003688623.1 | lipoyl(octanoyl) transferase LipB | - |
| GYN04_RS04070 (GYN04_03945) | lipA | 787051..788034 (+) | 984 | WP_003688622.1 | lipoyl synthase | - |
| GYN04_RS04075 (GYN04_03950) | bfr | 788509..788973 (+) | 465 | WP_003688620.1 | bacterioferritin | - |
| GYN04_RS04080 (GYN04_03955) | bfr | 789001..789474 (+) | 474 | WP_003691178.1 | bacterioferritin | - |
| GYN04_RS04085 (GYN04_03960) | - | 789802..790122 (+) | 321 | WP_003688619.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63013.79 Da Isoelectric Point: 6.0948
>NTDB_id=420237 GYN04_RS03970 WP_192214676.1 769110..770855(+) (recD) [Neisseria gonorrhoeae strain CT530]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEHREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEHREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=420237 GYN04_RS03970 WP_192214676.1 769110..770855(+) (recD) [Neisseria gonorrhoeae strain CT530]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCTTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ACATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCTTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ACATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.656 |
100 |
0.997 |