Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GYN05_RS05280 Genome accession   NZ_CP048250
Coordinates   1017828..1018289 (+) Length   153 a.a.
NCBI ID   WP_003688187.1    Uniprot ID   A0AA44U815
Organism   Neisseria gonorrhoeae strain CT532     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012828..1023289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN05_RS05250 (GYN05_05105) - 1012861..1014075 (-) 1215 WP_003695054.1 pyridoxal phosphate-dependent aminotransferase -
  GYN05_RS05255 (GYN05_05110) - 1014164..1014373 (-) 210 WP_003688192.1 4-oxalocrotonate tautomerase family protein -
  GYN05_RS05260 (GYN05_05115) - 1014565..1015371 (+) 807 WP_003690982.1 DUF4198 domain-containing protein -
  GYN05_RS11905 (GYN05_05120) - 1015431..1016650 (-) 1220 Protein_1033 Glu/Leu/Phe/Val dehydrogenase -
  GYN05_RS05275 (GYN05_05125) - 1017045..1017755 (+) 711 WP_003690977.1 phosphoglycolate phosphatase -
  GYN05_RS05280 (GYN05_05130) recX 1017828..1018289 (+) 462 WP_003688187.1 recombination regulator RecX Regulator
  GYN05_RS05285 - 1018363..1018524 (+) 162 WP_025455785.1 hypothetical protein -
  GYN05_RS05290 (GYN05_05135) - 1018677..1019159 (+) 483 WP_003688183.1 acyl-CoA thioesterase -
  GYN05_RS05295 (GYN05_05140) - 1019557..1020570 (-) 1014 WP_025455876.1 peptidoglycan DD-metalloendopeptidase family protein -
  GYN05_RS05300 (GYN05_05145) surE 1020672..1021418 (-) 747 WP_003690973.1 5'/3'-nucleotidase SurE -
  GYN05_RS05305 (GYN05_05150) - 1021435..1022991 (-) 1557 WP_241534666.1 TerC family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17745.13 Da        Isoelectric Point: 10.4361

>NTDB_id=420192 GYN05_RS05280 WP_003688187.1 1017828..1018289(+) (recX) [Neisseria gonorrhoeae strain CT532]
MKPQKSLRARAMDILSRQEVSRIGLKRKLAPHAESEEELENVLNEFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQ
QGIDEKTSRNLLPDRSSEKQAAIAVLRKKFKHPAANLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDSC

Nucleotide


Download         Length: 462 bp        

>NTDB_id=420192 GYN05_RS05280 WP_003688187.1 1017828..1018289(+) (recX) [Neisseria gonorrhoeae strain CT532]
ATGAAACCGCAAAAATCCCTACGCGCCCGCGCGATGGACATCCTCTCGCGCCAAGAAGTCAGCCGCATCGGTCTGAAACG
CAAACTTGCACCGCACGCCGAAAGCGAAGAGGAGTTGGAAAACGTGTTAAACGAATTTGCCGAACGCAACTGGCAGTCGG
ATTTGCGCTACGCCGAAGCCTATATCCGCAGCAAAAGCCGCAAACACGGTTCATTGAGGCTGAAACAGGCTTTGGCGCAA
CAGGGCATAGATGAAAAAACCAGCCGCAACCTGCTTCCCGACCGCTCAAGCGAAAAGCAAGCCGCCATAGCCGTGTTGCG
TAAAAAATTCAAACACCCCGCCGCCAACCTCAAAGAAAAACAAAAACAGGCGCGTTTCCTCGCCTATCGCGGTTTTGATG
CCGATACCGTTCAGACGGCATTGAAACACGCTTGGGACGAAAATTGGGAAGACAGCTGCTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

100

100

1

Multiple sequence alignment