Detailed information NTG0420138

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IBZ91_RS05260
• Genome accession: NZ_CP061108
• Coordinates: 1089958..1090950 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1EC187
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1084958..1095950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBZ91_RS05230 (IBZ91_05220)	ispD	1085019..1085729 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IBZ91_RS05235 (IBZ91_05225)	ispF	1085729..1086208 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IBZ91_RS05240 (IBZ91_05230)	truD	1086205..1087254 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IBZ91_RS05245 (IBZ91_05235)	surE	1087235..1087996 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
IBZ91_RS05250 (IBZ91_05240)	pcm	1087990..1088616 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IBZ91_RS05255 (IBZ91_05245)	nlpD	1088801..1089895 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IBZ91_RS05260 (IBZ91_05250)	rpoS	1089958..1090950 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IBZ91_RS05265 (IBZ91_05255)	ygbN	1091044..1092408 (-)	1365	WP_000104456.1	GntP family transporter	-
IBZ91_RS05270 (IBZ91_05260)	ygbM	1092497..1093273 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IBZ91_RS05275 (IBZ91_05265)	ygbL	1093278..1093916 (-)	639	WP_001278994.1	aldolase	-
IBZ91_RS05280 (IBZ91_05270)	otnK	1093913..1095175 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=420138 IBZ91_RS05260 WP_000081550.1 1089958..1090950(+) (rpoS) [Escherichia coli strain 1EC187]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=420138 IBZ91_RS05260 WP_000081550.1 1089958..1090950(+) (rpoS) [Escherichia coli strain 1EC187]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715