Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IB009_RS08820 Genome accession   NZ_CP061101
Coordinates   1834249..1835676 (-) Length   475 a.a.
NCBI ID   WP_199206637.1    Uniprot ID   -
Organism   Escherichia coli strain 1EC213     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829249..1840676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB009_RS08790 (IB009_08780) yeeZ 1829304..1830128 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  IB009_RS08795 (IB009_08785) yeeY 1830174..1831103 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IB009_RS08800 (IB009_08790) yoeI 1831318..1831380 (+) 63 WP_010723108.1 membrane protein YoeI -
  IB009_RS08805 (IB009_08795) plaP 1831370..1832728 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IB009_RS08810 (IB009_08800) tsuA 1832907..1833965 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  IB009_RS08815 (IB009_08805) tsuB 1833979..1834206 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IB009_RS08820 (IB009_08810) sbcB 1834249..1835676 (-) 1428 WP_199206637.1 exodeoxyribonuclease I Machinery gene
  IB009_RS08825 (IB009_08815) dacD 1835885..1837051 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IB009_RS08830 (IB009_08820) sbmC 1837170..1837643 (+) 474 WP_086732420.1 DNA gyrase inhibitor SbmC -
  IB009_RS08835 (IB009_08825) yeeA 1837841..1838899 (+) 1059 WP_001200905.1 FUSC family protein -
  IB009_RS08840 (IB009_08830) tmaR 1839071..1839400 (+) 330 WP_000450409.1 DUF496 family protein -
  IB009_RS08845 (IB009_08835) - 1839501..1839683 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IB009_RS08850 (IB009_08840) - 1840137..1840526 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.78 Da        Isoelectric Point: 5.5955

>NTDB_id=420072 IB009_RS08820 WP_199206637.1 1834249..1835676(-) (sbcB) [Escherichia coli strain 1EC213]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQHYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=420072 IB009_RS08820 WP_199206637.1 1834249..1835676(-) (sbcB) [Escherichia coli strain 1EC213]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCACT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581