Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   IBG29_RS25560 Genome accession   NZ_CP061073
Coordinates   5483300..5483656 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PAD8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5478300..5488656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS25535 (IBG29_08530) fabF 5478512..5479756 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  IBG29_RS25540 (IBG29_08525) pabC 5479756..5480571 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  IBG29_RS25545 (IBG29_08520) mltG 5480577..5481626 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  IBG29_RS25550 (IBG29_08515) tmk 5481655..5482287 (+) 633 WP_003091125.1 dTMP kinase -
  IBG29_RS25555 (IBG29_08510) - 5482280..5483266 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  IBG29_RS25560 (IBG29_08505) pilZ 5483300..5483656 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  IBG29_RS25565 (IBG29_08500) - 5483671..5484447 (+) 777 WP_003091117.1 TatD family hydrolase -
  IBG29_RS25570 (IBG29_08495) - 5484673..5485806 (-) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  IBG29_RS25575 (IBG29_08490) - 5485892..5486530 (+) 639 WP_034002327.1 TetR/AcrR family transcriptional regulator -
  IBG29_RS25580 (IBG29_08485) - 5486697..5487593 (+) 897 WP_003091113.1 radical SAM protein -
  IBG29_RS25585 (IBG29_08480) - 5487658..5488290 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=420028 IBG29_RS25560 WP_003091119.1 5483300..5483656(+) (pilZ) [Pseudomonas aeruginosa strain PAD8]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=420028 IBG29_RS25560 WP_003091119.1 5483300..5483656(+) (pilZ) [Pseudomonas aeruginosa strain PAD8]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAATACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449