Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IBG29_RS12295 Genome accession   NZ_CP061073
Coordinates   2647124..2647720 (-) Length   198 a.a.
NCBI ID   WP_031671448.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAD8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2642124..2652720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS12275 (IBG29_21785) aroK 2643256..2643774 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IBG29_RS12280 (IBG29_21780) pilQ 2643786..2645930 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  IBG29_RS12285 (IBG29_21775) comL/pilP 2645984..2646508 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IBG29_RS12290 (IBG29_21770) pilO 2646505..2647127 (-) 623 Protein_2420 type 4a pilus biogenesis protein PilO -
  IBG29_RS12295 (IBG29_21765) pilN 2647124..2647720 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  IBG29_RS12300 (IBG29_21760) pilM 2647720..2648784 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IBG29_RS12305 (IBG29_21755) - 2648969..2651440 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22183.52 Da        Isoelectric Point: 10.0895

>NTDB_id=419977 IBG29_RS12295 WP_031671448.1 2647124..2647720(-) (pilN) [Pseudomonas aeruginosa strain PAD8]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPALNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=419977 IBG29_RS12295 WP_031671448.1 2647124..2647720(-) (pilN) [Pseudomonas aeruginosa strain PAD8]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGGCCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369