Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IBG29_RS12285 Genome accession   NZ_CP061073
Coordinates   2645984..2646508 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PAD8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2640984..2651508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS12270 (IBG29_21790) aroB 2642100..2643206 (-) 1107 WP_003116138.1 3-dehydroquinate synthase -
  IBG29_RS12275 (IBG29_21785) aroK 2643256..2643774 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IBG29_RS12280 (IBG29_21780) pilQ 2643786..2645930 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  IBG29_RS12285 (IBG29_21775) comL/pilP 2645984..2646508 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IBG29_RS12290 (IBG29_21770) pilO 2646505..2647127 (-) 623 Protein_2420 type 4a pilus biogenesis protein PilO -
  IBG29_RS12295 (IBG29_21765) pilN 2647124..2647720 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  IBG29_RS12300 (IBG29_21760) pilM 2647720..2648784 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IBG29_RS12305 (IBG29_21755) - 2648969..2651440 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=419976 IBG29_RS12285 WP_003095836.1 2645984..2646508(-) (comL/pilP) [Pseudomonas aeruginosa strain PAD8]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=419976 IBG29_RS12285 WP_003095836.1 2645984..2646508(-) (comL/pilP) [Pseudomonas aeruginosa strain PAD8]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362