Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   M662_RS17180 Genome accession   NZ_CP048117
Coordinates   3292367..3292696 (-) Length   109 a.a.
NCBI ID   WP_008632415.1    Uniprot ID   A0A7Z2SZ72
Organism   Bacillus sp. SB49     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287367..3297696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS17140 (M662_17095) - 3287887..3289194 (-) 1308 WP_008632423.1 ABC transporter substrate-binding protein -
  M662_RS17145 (M662_17100) - 3289554..3289988 (+) 435 WP_008632422.1 Hsp20/alpha crystallin family protein -
  M662_RS17150 (M662_17105) - 3289982..3290440 (-) 459 WP_008632421.1 Hsp20/alpha crystallin family protein -
  M662_RS17155 (M662_17110) - 3290484..3290678 (+) 195 WP_008632420.1 hypothetical protein -
  M662_RS17160 (M662_17115) - 3290683..3291003 (+) 321 WP_008632419.1 hypothetical protein -
  M662_RS17165 (M662_17120) - 3291005..3291298 (+) 294 WP_008632418.1 hypothetical protein -
  M662_RS17170 (M662_17125) - 3291556..3291801 (-) 246 WP_008632417.1 hypothetical protein -
  M662_RS17175 (M662_17130) - 3291858..3292028 (-) 171 WP_161484927.1 hypothetical protein -
  M662_RS17180 (M662_17135) sinR 3292367..3292696 (-) 330 WP_008632415.1 helix-turn-helix domain-containing protein Regulator
  M662_RS17185 (M662_17140) - 3292948..3293664 (+) 717 WP_026577880.1 CBS domain-containing protein -
  M662_RS17190 (M662_17145) - 3293746..3294105 (+) 360 WP_152413288.1 PilZ domain-containing protein -
  M662_RS17195 (M662_17150) - 3294171..3295124 (-) 954 WP_051348891.1 class F sortase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12750.44 Da        Isoelectric Point: 6.2386

>NTDB_id=419971 M662_RS17180 WP_008632415.1 3292367..3292696(-) (sinR) [Bacillus sp. SB49]
MIGERIKKIRKDRHMSLSELAERAGVAKSYLSSIERNIQTNPSVQFLTKISQELGVTINFLLHGEAEPQDENLDEEWMNL
VQEAMNSGISKDQFREYLEFNKWRIHQSK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=419971 M662_RS17180 WP_008632415.1 3292367..3292696(-) (sinR) [Bacillus sp. SB49]
ATGATCGGTGAGCGGATTAAGAAAATACGTAAAGACCGTCATATGTCGCTGTCTGAATTAGCCGAAAGAGCAGGGGTGGC
GAAGTCGTACCTAAGTTCCATCGAGCGGAATATCCAAACGAATCCTTCCGTTCAGTTTCTGACAAAAATATCTCAGGAGT
TGGGCGTAACCATTAATTTTCTTCTCCATGGGGAAGCGGAACCTCAGGATGAGAATCTGGATGAAGAATGGATGAACCTC
GTTCAAGAAGCAATGAATTCAGGGATATCGAAAGATCAATTCAGGGAATACTTGGAGTTCAATAAGTGGAGGATCCACCA
AAGTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(73-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2SZ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

61.111

99.083

0.606

Multiple sequence alignment