Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M662_RS05930 Genome accession   NZ_CP048117
Coordinates   1146637..1148448 (+) Length   603 a.a.
NCBI ID   WP_026578367.1    Uniprot ID   A0A7Z2SV90
Organism   Bacillus sp. SB49     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1141637..1153448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS05905 (M662_05905) - 1142332..1142922 (+) 591 WP_008638742.1 GNAT family N-acetyltransferase -
  M662_RS05910 (M662_05910) spxA 1143209..1143604 (+) 396 WP_008638741.1 transcriptional regulator SpxA -
  M662_RS05915 (M662_05915) - 1143674..1144339 (-) 666 WP_026578365.1 TerC family protein -
  M662_RS05920 (M662_05920) mecA 1144639..1145331 (+) 693 WP_008638737.1 adaptor protein MecA Regulator
  M662_RS05925 (M662_05925) - 1145427..1146554 (+) 1128 WP_026578366.1 competence protein CoiA family protein -
  M662_RS05930 (M662_05930) pepF 1146637..1148448 (+) 1812 WP_026578367.1 oligoendopeptidase F Regulator
  M662_RS05935 - 1148510..1148689 (-) 180 WP_008638734.1 hypothetical protein -
  M662_RS05940 (M662_05935) - 1148777..1149664 (-) 888 WP_008638733.1 ClpXP adapter SpxH family protein -
  M662_RS05945 (M662_05940) - 1149661..1150059 (-) 399 WP_008638732.1 globin -
  M662_RS05950 (M662_05945) - 1150120..1150701 (-) 582 WP_008638731.1 CYTH domain-containing protein -
  M662_RS05955 (M662_05950) - 1150834..1151472 (+) 639 WP_008638730.1 GTP pyrophosphokinase family protein -
  M662_RS05960 (M662_05955) - 1151487..1152293 (+) 807 WP_008638727.1 NAD kinase -
  M662_RS05965 (M662_05960) - 1152283..1153170 (+) 888 WP_236096541.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69328.81 Da        Isoelectric Point: 4.8652

>NTDB_id=419950 M662_RS05930 WP_026578367.1 1146637..1148448(+) (pepF) [Bacillus sp. SB49]
MSSTKQLPKREEIPVEKTWDLEAIFETDEKWYEELKAIEGMLPELDNYRGNLGASAEQLYKLLDFQDKISNRIGRLYTYA
HMRNDQDTTNSHYQEMNAKAESLFTKLASAMSFIVPEILALPEGTVKGYLDTYKPLELYRHTLDEITRQRAHVLSEQEEK
LLAGFSEIGANPSQTFGALNNADITFPVIKNEKGEDVELTHGRYVGFLKSDDRDVRRRAFEAMYDTFGSFKNTFASTLSG
HVKKNNFNATVRKYDRARQAKLDNNNIPESVYDNLIEAVHERLPLLHRYAEMRKEVLGLDEVHMYDLYTPLVKDAEMEVS
YEEAQKLVLDGLKPLGEEYGEILQSAFKDRWIDVEENKGKRSGAYSSGHYGTNPYILMNWQDNVNNLFTLAHELGHSLHS
YYTHRNQPYRYGNYSIFVAEVASTCNEALLNDHLLNKVDSDKEKLYLLNNFLEGFRGTVFRQTMFAEFEHEIHIQAQNGE
ALTAGKLTEIYYDLNKKYFGDNIVIDDDIGLEWARIPHFYMGYYVYQYATGYAAAQALAGQILEEGEPAVDRYKSFLKAG
SSDYPIEVLKRAGVDMTSKDPILAALDVFEEKLNEMEQLLQKA

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=419950 M662_RS05930 WP_026578367.1 1146637..1148448(+) (pepF) [Bacillus sp. SB49]
ATGTCTTCAACGAAACAATTACCAAAACGTGAGGAGATTCCTGTAGAAAAAACGTGGGACCTCGAGGCTATATTTGAAAC
GGATGAGAAATGGTATGAAGAGCTGAAAGCGATTGAGGGAATGCTTCCCGAACTGGACAACTATCGGGGGAATTTAGGAG
CATCGGCCGAGCAGCTTTACAAACTGCTTGATTTCCAGGACAAAATTTCGAATCGCATCGGCCGTCTATATACTTATGCC
CATATGAGGAACGATCAGGATACGACGAACTCTCATTATCAGGAGATGAATGCGAAAGCGGAATCGCTGTTTACCAAACT
CGCCTCTGCGATGAGCTTCATCGTTCCTGAAATTCTTGCGCTGCCGGAAGGTACGGTTAAAGGATACCTTGATACTTACA
AGCCGTTGGAATTATACAGACACACCCTTGATGAGATTACGCGGCAGCGGGCACATGTGCTCAGTGAACAGGAAGAGAAG
CTGTTGGCTGGTTTTTCGGAAATCGGGGCGAATCCTTCCCAGACCTTCGGAGCGCTTAACAATGCGGACATTACTTTCCC
TGTGATTAAAAACGAGAAGGGGGAAGACGTGGAGCTCACGCACGGCCGCTATGTCGGATTCTTGAAATCAGATGACAGAG
ATGTACGCAGGCGTGCGTTTGAAGCGATGTACGACACGTTCGGTTCCTTTAAGAATACGTTCGCCTCCACGCTCAGCGGG
CATGTGAAGAAGAATAATTTCAATGCGACGGTAAGGAAGTATGACCGGGCTCGTCAGGCGAAGCTTGATAACAACAACAT
CCCTGAATCCGTATACGACAATTTGATTGAAGCGGTTCATGAACGCCTGCCTTTATTACATCGTTATGCAGAAATGCGTA
AAGAGGTCCTCGGGTTGGATGAAGTGCATATGTACGACTTATATACACCGCTTGTTAAGGATGCGGAAATGGAAGTTTCT
TATGAAGAAGCGCAGAAGCTTGTGCTGGACGGGCTGAAACCGCTTGGAGAAGAGTACGGGGAGATCCTTCAGTCAGCATT
TAAAGATCGGTGGATCGATGTCGAAGAGAATAAAGGAAAACGGAGCGGTGCGTATTCCTCCGGCCACTACGGTACCAACC
CTTACATCCTTATGAACTGGCAGGACAACGTGAACAACTTGTTCACCCTTGCTCACGAGCTCGGCCACTCCCTGCACAGT
TACTACACGCACCGGAACCAGCCATATCGTTACGGTAACTACTCCATCTTTGTGGCAGAGGTTGCATCTACTTGTAATGA
AGCGCTGTTGAACGATCATCTTTTGAACAAAGTTGACAGTGACAAAGAAAAGCTGTACCTGTTGAATAATTTTCTGGAAG
GCTTTCGGGGAACCGTCTTTCGTCAGACGATGTTCGCGGAGTTCGAGCATGAAATTCATATTCAGGCCCAGAACGGGGAG
GCTCTTACAGCCGGTAAGCTGACAGAAATCTATTATGATTTGAATAAGAAGTATTTCGGTGACAATATCGTCATTGATGA
CGATATCGGATTGGAATGGGCGCGCATCCCGCACTTCTATATGGGATACTACGTCTATCAGTATGCTACAGGTTATGCAG
CCGCACAGGCACTGGCGGGGCAGATCCTGGAAGAGGGCGAACCAGCGGTCGACCGCTATAAGAGCTTCCTTAAGGCGGGC
AGCAGTGATTACCCGATCGAGGTGTTGAAACGCGCCGGCGTAGATATGACCTCCAAAGATCCGATTCTTGCTGCACTGGA
CGTGTTTGAAGAGAAGTTGAATGAAATGGAACAATTGCTGCAGAAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(208-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2SV90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.993

98.839

0.484

Multiple sequence alignment