Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M662_RS00480 Genome accession   NZ_CP048117
Coordinates   90370..90645 (-) Length   91 a.a.
NCBI ID   WP_008633460.1    Uniprot ID   A0A7Z2STH1
Organism   Bacillus sp. SB49     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 85370..95645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS00445 (M662_00445) - 85671..86111 (+) 441 WP_026577069.1 YaaR family protein -
  M662_RS00450 (M662_00450) holB 86127..87113 (+) 987 WP_026577068.1 DNA polymerase III subunit delta' -
  M662_RS00455 (M662_00455) - 87121..87948 (+) 828 WP_008633451.1 stage 0 sporulation family protein -
  M662_RS00460 (M662_00460) yabA 87964..88311 (+) 348 WP_008633452.1 DNA replication initiation control protein YabA -
  M662_RS00465 (M662_00465) - 88388..89131 (+) 744 WP_026577067.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M662_RS00470 (M662_00470) - 89121..89420 (+) 300 WP_026577066.1 GIY-YIG nuclease family protein -
  M662_RS00475 (M662_00475) rsmI 89389..90261 (+) 873 WP_026577065.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M662_RS00480 (M662_00480) abrB 90370..90645 (-) 276 WP_008633460.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M662_RS00485 (M662_00485) metG 91063..93015 (+) 1953 WP_008633462.1 methionine--tRNA ligase -
  M662_RS00490 (M662_00490) - 93083..93856 (+) 774 WP_026577064.1 TatD family hydrolase -
  M662_RS00495 (M662_00495) - 94080..95321 (+) 1242 WP_026577063.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10254.91 Da        Isoelectric Point: 5.1596

>NTDB_id=419943 M662_RS00480 WP_008633460.1 90370..90645(-) (abrB) [Bacillus sp. SB49]
MKSTGIVRKVDELGRVVIPIELRRTLGINEKDALEIYVDDDRIVLKKYKPNMTCQVTGEVSDDNMKLANGNLVLSKEGAQ
ILLQELQDNLK

Nucleotide


Download         Length: 276 bp        

>NTDB_id=419943 M662_RS00480 WP_008633460.1 90370..90645(-) (abrB) [Bacillus sp. SB49]
ATGAAATCTACAGGTATCGTACGTAAAGTCGACGAACTAGGTCGTGTAGTAATCCCGATCGAACTTCGCCGCACATTGGG
AATCAACGAAAAAGACGCATTGGAAATTTATGTTGATGATGATCGTATCGTCCTTAAAAAGTACAAGCCGAACATGACAT
GTCAGGTGACAGGGGAAGTTTCAGATGACAATATGAAACTGGCCAATGGCAACCTCGTCCTTAGCAAAGAAGGCGCACAA
ATCCTTCTTCAAGAGCTACAAGACAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2STH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

82.418

100

0.824

Multiple sequence alignment