Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   M662_RS00215 Genome accession   NZ_CP048117
Coordinates   40953..42071 (+) Length   372 a.a.
NCBI ID   WP_008636170.1    Uniprot ID   A0A7Z2STE2
Organism   Bacillus sp. SB49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35953..47071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M662_RS00190 (M662_00190) rnpA 36568..36921 (-) 354 WP_008636180.1 ribonuclease P protein component -
  M662_RS00195 (M662_00195) rpmH 37060..37194 (-) 135 WP_081594803.1 50S ribosomal protein L34 -
  M662_RS00200 (M662_00200) dnaA 37872..39227 (+) 1356 WP_008636174.1 chromosomal replication initiator protein DnaA -
  M662_RS00205 (M662_00205) dnaN 39403..40542 (+) 1140 WP_008636172.1 DNA polymerase III subunit beta -
  M662_RS00210 (M662_00210) yaaA 40714..40935 (+) 222 WP_008636171.1 S4 domain-containing protein YaaA -
  M662_RS00215 (M662_00215) recF 40953..42071 (+) 1119 WP_008636170.1 DNA replication/repair protein RecF Machinery gene
  M662_RS00220 (M662_00220) - 42081..42359 (+) 279 WP_008636169.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  M662_RS00225 (M662_00225) gyrB 42448..44358 (+) 1911 WP_162129324.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M662_RS00230 (M662_00230) gyrA 44470..47019 (+) 2550 WP_026577626.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 42971.19 Da        Isoelectric Point: 7.3991

>NTDB_id=419941 M662_RS00215 WP_008636170.1 40953..42071(+) (recF) [Bacillus sp. SB49]
MHIKELSLRSYRNYDDLSLTFDHKINVIIGENAQGKTNLMEAIYVLAFTRSHRTPRDKELIQWDQEYGKIKGSISKRNQR
FPLEIIISNKGKKAKLNHMEQKRLSDYIGALNVVMFAPEDLNLVKGSPQVRRRFIDMEIGQIQPRYIYHLGQYQKILKQR
NHLLKDLQRKPGADRTMLAVLTEQLMEHAATIVERRFKFLQLLRSWAAPIHEGISRQLEQLQISYDASVKVSEDMNLETI
KKTYSEKFAEIEAKEVERGTTLAGPHRDDLLFYVNGKDVQTYGSQGQQRTTALSLKLAEIELIHSEVGEYPILLLDDVLS
ELDDFRQSHLLHTIQGKVQTFVSTTSIEGIEHEALEEAAIFRVREGTIDVEK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=419941 M662_RS00215 WP_008636170.1 40953..42071(+) (recF) [Bacillus sp. SB49]
ATGCATATCAAGGAACTGTCCCTGAGATCGTACCGGAATTATGATGATCTCTCCCTGACTTTCGACCATAAGATCAACGT
CATCATTGGTGAAAATGCCCAGGGTAAAACCAATTTGATGGAAGCGATCTATGTCTTAGCGTTCACTCGTTCACACCGGA
CGCCGAGAGATAAAGAATTGATACAGTGGGATCAAGAGTATGGTAAAATAAAAGGTAGTATTTCTAAACGGAATCAACGC
TTTCCCCTTGAAATCATCATTTCCAATAAAGGGAAAAAAGCGAAGTTGAATCATATGGAACAAAAGCGTTTGAGTGACTA
TATCGGCGCTTTGAATGTCGTCATGTTTGCACCTGAGGATCTCAATCTTGTCAAAGGGAGTCCTCAGGTGCGTCGTCGGT
TTATCGACATGGAAATCGGGCAGATCCAGCCAAGGTATATTTATCACCTCGGACAGTATCAAAAAATACTCAAGCAGCGA
AATCATTTATTGAAAGACCTGCAGAGAAAGCCGGGGGCAGACCGGACGATGCTTGCCGTCCTGACAGAGCAGCTGATGGA
ACACGCAGCGACGATCGTCGAGCGGAGGTTCAAGTTCCTTCAGCTTCTTCGTTCATGGGCGGCTCCGATCCATGAAGGGA
TCAGCCGACAGCTGGAACAATTACAAATTTCCTATGATGCGAGTGTGAAAGTATCAGAGGATATGAATTTGGAAACAATA
AAGAAGACATATTCGGAAAAGTTCGCGGAAATAGAAGCAAAAGAGGTGGAACGCGGCACCACGCTTGCCGGTCCGCACCG
GGACGATCTCTTGTTCTATGTTAACGGGAAGGATGTTCAGACGTACGGCTCCCAAGGCCAGCAGCGGACGACGGCGTTGT
CTTTGAAACTCGCAGAAATCGAATTGATTCACAGCGAAGTGGGAGAATACCCGATTCTTCTGTTGGATGACGTGCTCAGC
GAGCTGGATGACTTCCGTCAGTCCCACCTGCTTCATACGATCCAAGGGAAAGTGCAGACGTTCGTTTCGACGACGAGCAT
TGAAGGGATCGAACATGAGGCGTTGGAGGAGGCTGCGATATTCCGTGTCCGTGAAGGAACGATAGACGTTGAGAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2STE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

65.489

98.925

0.648

Multiple sequence alignment