Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GSF71_RS07920 Genome accession   NZ_CP048116
Coordinates   1594609..1595037 (+) Length   142 a.a.
NCBI ID   WP_151384770.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1589609..1600037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS07905 - 1591187..1592275 (+) 1089 WP_035144637.1 glycosyltransferase family 4 protein -
  GSF71_RS07910 - 1592302..1592967 (-) 666 WP_162100935.1 YigZ family protein -
  GSF71_RS07915 comFA 1593029..1594366 (+) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  GSF71_RS07920 comFC 1594609..1595037 (+) 429 WP_151384770.1 ComF family protein Machinery gene
  GSF71_RS07925 hpf 1595164..1595709 (+) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GSF71_RS07930 secA 1595958..1598321 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  GSF71_RS07935 prfB 1598391..1599507 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16619.07 Da        Isoelectric Point: 10.2048

>NTDB_id=419934 GSF71_RS07920 WP_151384770.1 1594609..1595037(+) (comFC) [Latilactobacillus sakei strain MBEL1397]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=419934 GSF71_RS07920 WP_151384770.1 1594609..1595037(+) (comFC) [Latilactobacillus sakei strain MBEL1397]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

97.183

100

0.972
  comFC Lactococcus lactis subsp. cremoris KW2

36.62

100

0.366

Multiple sequence alignment