Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HYC88_RS17410 Genome accession   NZ_CP061072
Coordinates   4085183..4086313 (-) Length   376 a.a.
NCBI ID   WP_073799902.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4080183..4091313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS17400 (HYC88_17400) gyrB 4082153..4084222 (-) 2070 WP_073799903.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HYC88_RS17405 (HYC88_17405) - 4084602..4085105 (-) 504 WP_073800780.1 DUF721 domain-containing protein -
  HYC88_RS17410 (HYC88_17410) recF 4085183..4086313 (-) 1131 WP_073799902.1 DNA replication/repair protein RecF Machinery gene
  HYC88_RS17415 (HYC88_17415) gnd 4086390..4087268 (-) 879 WP_047177633.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  HYC88_RS17420 (HYC88_17420) dnaN 4087431..4088561 (-) 1131 WP_073799901.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41009.68 Da        Isoelectric Point: 6.6274

>NTDB_id=419894 HYC88_RS17410 WP_073799902.1 4085183..4086313(-) (recF) [Streptomyces sp. CB00271]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVTLEYRSSVGEEVG
PERTRDELYEQLIAALEGVRKQEIERGVTLVGPHRDDLLLGLRSMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGARYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=419894 HYC88_RS17410 WP_073799902.1 4085183..4086313(-) (recF) [Streptomyces sp. CB00271]
ATGCATGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGGATGGGCGCGGAGCGGGCGGTGATCCGCGCGGCGGTCACCCAGGGCGAGCGTTCG
CAGCTGATCGAGCTGGAGCTGAACCCGGGCCGTGCCAACCGGGCCCGTATCAACAGGTCCTCGCAGGTCAGACCGCGTGA
CGTGCTCGGCATCGTACGGACCGTGCTGTTCGCGCCGGAGGATCTGGCCCTGATCAAGGGCGACCCCGGTGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACGGCGCGCTCCCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCGCGGCGGCACGGCGGCCGCTCGATGGATCTGTCCACGCTCGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAGCTGCTCGCGCAGCGCCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTCGCGCCGGGCGGCGGTCCGGTGACGCTGGAGTACCGCAGCTCGGTCGGCGAGGAGGTGGGC
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGCTGATCGCGGCGCTGGAGGGGGTCCGCAAGCAGGAGATCGAGCGCGG
CGTGACCCTCGTCGGCCCGCACCGCGACGATCTGTTGCTCGGTCTGAGGTCCATGCCGGCGAAGGGGTACGCGAGTCACG
GCGAGTCCTGGAGCTACGCGCTGGCGCTGCGGCTGGCCAGTTACGAGCTGTTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGACGTCTTCGCCGAGTTGGACGCCCGCCGCCGTGAGCGGCTGGCGGAGCTGGTGGCTCCGGGCGAGCAGGT
GCTCGTGACGGCCGCGGTGGCGGAGGACGTTCCGGGTGTGCTGGCGGGGGCGCGGTACGCGGTGACCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.705

97.34

0.367