Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SPPN_RS03040 Genome accession   NC_015875
Coordinates   569663..569956 (+) Length   97 a.a.
NCBI ID   WP_000797748.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564663..574956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS03020 (SPPN_03075) - 564899..565408 (+) 510 WP_000619957.1 GNAT family N-acetyltransferase -
  SPPN_RS03025 (SPPN_03080) pheT 565485..567890 (+) 2406 WP_000961530.1 phenylalanine--tRNA ligase subunit beta -
  SPPN_RS03030 (SPPN_03085) - 567958..568959 (-) 1002 WP_000590360.1 endonuclease/exonuclease/phosphatase family protein -
  SPPN_RS03035 - 569115..569604 (+) 490 Protein_621 transposase -
  SPPN_RS03040 (SPPN_03100) HI0659 569663..569956 (+) 294 WP_000797748.1 helix-turn-helix domain-containing protein Machinery gene
  SPPN_RS03045 (SPPN_03105) metE 570372..572621 (+) 2250 WP_000108257.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SPPN_RS03050 (SPPN_03110) metF 572685..573551 (+) 867 WP_000089978.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10737.40 Da        Isoelectric Point: 5.8787

>NTDB_id=41988 SPPN_RS03040 WP_000797748.1 569663..569956(+) (HI0659) [Streptococcus pseudopneumoniae IS7493]
MKNSAIGSNWKDVRSQLFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=41988 SPPN_RS03040 WP_000797748.1 569663..569956(+) (HI0659) [Streptococcus pseudopneumoniae IS7493]
ATGAAGAATAGTGCTATTGGGAGTAATTGGAAGGATGTCCGGTCTCAACTCTTTACCAAGGAGGAAATCCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGCTGATTGAAGCCAGGCATGAGCAAGGAATCAGTCAGAAAAAGCTAGAAGAACTTA
GTGGAGTAAGCCAGCCTGTCATAGCTAGGATGGAAACAGGCAAGACTAGTCCTCAGTTGGACACAGTCTTAAAAGTCCTA
GCCAGTTTGGGAAAGACACTAGCAGTCGTCCCACTCGAACAGGAAAAGAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment