Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HYC88_RS06875 Genome accession   NZ_CP061072
Coordinates   1650562..1651359 (+) Length   265 a.a.
NCBI ID   WP_010072358.1    Uniprot ID   A0ABZ1ZGP1
Organism   Streptomyces sp. CB00271     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1645562..1656359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS06860 (HYC88_06860) - 1645789..1646325 (+) 537 WP_073803621.1 TerD family protein -
  HYC88_RS06865 (HYC88_06865) - 1646488..1649385 (-) 2898 WP_073803620.1 vitamin B12-dependent ribonucleotide reductase -
  HYC88_RS06870 (HYC88_06870) nrdR 1649560..1650072 (-) 513 WP_018962021.1 transcriptional regulator NrdR -
  HYC88_RS06875 (HYC88_06875) dinR/lexA 1650562..1651359 (+) 798 WP_010072358.1 transcriptional repressor LexA Regulator
  HYC88_RS06880 (HYC88_06880) - 1651545..1653515 (-) 1971 WP_073803619.1 ATP-dependent DNA helicase -
  HYC88_RS06885 (HYC88_06885) - 1653554..1655461 (-) 1908 WP_073803618.1 IucA/IucC family siderophore biosynthesis protein -
  HYC88_RS06890 (HYC88_06890) - 1655522..1656283 (-) 762 WP_073803617.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28777.52 Da        Isoelectric Point: 7.4761

>NTDB_id=419865 HYC88_RS06875 WP_010072358.1 1650562..1651359(+) (dinR/lexA) [Streptomyces sp. CB00271]
MTTTADSATITARDHRSQSRLEPVHAMNDSVTNTDGPEPARPGRSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=419865 HYC88_RS06875 WP_010072358.1 1650562..1651359(+) (dinR/lexA) [Streptomyces sp. CB00271]
GTGACCACCACCGCAGACAGCGCCACCATCACCGCCCGGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCACGAACACGGACGGGCCCGAGCCCGCACGCCCGGGGCGTTCCATGCCCGGCAGGCCTCCCGGCATCC
GGGCGGACAGCTCGGGGCTGACGGACCGGCAACGGCGGGTCATCGAGGTCATCCGTGACTCCGTGCAACGGCGGGGATAC
CCGCCCTCCATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCGCTGGA
GCGCAAGGGCTTCCTCCGCCGGGACCCGCACCGGCCCCGCGCCTACGAGGTGCGCGGCTCGGACCAGCCCAGCACCCAGC
CGACCGACACGACGGGCAAGCCCGCCGCGTCCTATGTGCCGCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCG
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGG
CGACTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACA
TCGTCGCCGCCATGCTCGACGGCGAGGCTACGGTCAAGCGCTTCCGCCGGGAGGACGGTCACGTATGGCTGCTCCCTCAC
AACGCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGACGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37