Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   IBL27_RS08530 Genome accession   NZ_CP061071
Coordinates   1752994..1754970 (-) Length   658 a.a.
NCBI ID   WP_002309335.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747994..1759970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS08500 (IBL27_08500) - 1748042..1748782 (+) 741 WP_002266024.1 LysR family transcriptional regulator -
  IBL27_RS08505 (IBL27_08505) - 1748828..1749784 (-) 957 WP_002266703.1 ketopantoate reductase family protein -
  IBL27_RS08510 (IBL27_08510) - 1749802..1750185 (-) 384 WP_002263531.1 hypothetical protein -
  IBL27_RS08515 (IBL27_08515) - 1750185..1750637 (-) 453 WP_002266702.1 LytTR family DNA-binding domain-containing protein -
  IBL27_RS08520 (IBL27_08520) - 1750712..1751224 (-) 513 WP_002278379.1 HXXEE domain-containing protein -
  IBL27_RS08525 (IBL27_08525) - 1751466..1752434 (-) 969 WP_002309337.1 helix-turn-helix transcriptional regulator -
  IBL27_RS08530 (IBL27_08530) recP/tkt 1752994..1754970 (-) 1977 WP_002309335.1 transketolase Machinery gene
  IBL27_RS08535 (IBL27_08535) ulaG 1755344..1756435 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  IBL27_RS08540 (IBL27_08540) - 1757013..1758677 (-) 1665 WP_002310899.1 BglG family transcription antiterminator -
  IBL27_RS08545 (IBL27_08545) comB/nlmE 1759046..1759948 (-) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71044.51 Da        Isoelectric Point: 4.7029

>NTDB_id=419833 IBL27_RS08530 WP_002309335.1 1752994..1754970(-) (recP/tkt) [Streptococcus mutans B04Sm5]
MSDLSVNAIRFLGVDAIEKSKSGHPGVVMGAAPMAYSLYTKHLRVNPSQPNWINRDRFVLSAGHGSMLLYALLHLSGFED
ISIDEIKNFRQWGSKTPGHPEYGHTVGVDVTTGPLGQGISMAVGLAQAERFLAAKYNREGYPIFDHYTYVIAGDGDFMEG
VSGEASSYAAKQNLDKLIVLYDSNDICLDGETNDAFTESVRARYDAYGWHTILVEDGNNIEAIGLAIEEAKAAGKPSLIE
IKTVIGYGAPTKGGTNAVHGAPLGAEEATATRKALNWGYAPFEVPQEVYDDFKENVADRGEAAYDAWSNLVGEYRQAYPK
EAREVDAIIDGKDPVEIKEADFPVYENGFSQATRNSSQDAINAAADVLPNFFGGSADLAHSNMTYIKADGLQDADNPLNR
NIQFGVREFAMGTVLNGMALHGGLRVYGGTFFVFSDYLKAAVRLSALQGVPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
ATPNLVVFRPADARETQAAWHYALTSQNTPTALVLTRQNLDVEAGSSFTSVAKGAYVTYETDSDFNTILLASGSEVNLAV
KAAKELEAQGEKVRVVSVPSTELFDEQSAAYKEAILPNSVRRRVAIEMAASQPWYKYVGLDGAVIGIDKFGASAPAAQVI
ENYGFTVDNVVKVVKGLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=419833 IBL27_RS08530 WP_002309335.1 1752994..1754970(-) (recP/tkt) [Streptococcus mutans B04Sm5]
ATGTCAGATTTATCGGTTAATGCCATTCGCTTTTTAGGGGTAGATGCTATTGAAAAGTCTAAGTCAGGTCACCCGGGTGT
TGTCATGGGCGCTGCCCCAATGGCTTACAGTCTATATACTAAGCATTTACGTGTTAACCCAAGTCAGCCAAATTGGATTA
ACCGTGACCGTTTTGTTTTGTCAGCTGGTCATGGCTCAATGCTTTTATATGCTCTCTTGCACTTGTCGGGATTTGAAGAT
ATTTCTATTGATGAAATCAAAAATTTCCGTCAGTGGGGCTCTAAAACACCGGGGCACCCTGAGTATGGCCATACCGTAGG
TGTTGATGTGACAACGGGCCCTCTTGGCCAAGGGATTTCAATGGCTGTTGGTTTGGCTCAAGCTGAACGTTTCTTAGCTG
CTAAATACAATCGTGAAGGCTACCCTATTTTTGACCACTATACTTATGTTATTGCCGGTGATGGTGATTTTATGGAAGGT
GTTTCTGGCGAAGCGTCATCCTATGCTGCCAAACAAAATTTGGATAAACTGATTGTTCTTTATGATTCTAATGATATTTG
TTTGGATGGTGAAACCAATGATGCATTCACTGAAAGTGTTCGTGCACGATATGATGCTTATGGATGGCATACAATCTTAG
TTGAAGATGGCAATAATATTGAAGCTATTGGACTTGCTATTGAAGAAGCAAAGGCAGCTGGCAAACCTTCTCTTATTGAA
ATTAAAACTGTGATTGGCTACGGTGCTCCAACTAAAGGCGGTACCAATGCTGTTCATGGTGCACCACTTGGAGCTGAAGA
AGCAACTGCTACTCGTAAGGCTCTCAATTGGGGTTATGCTCCTTTTGAAGTTCCTCAAGAGGTTTATGATGATTTCAAAG
AAAATGTTGCGGATCGTGGTGAAGCTGCTTACGATGCTTGGTCAAATCTTGTTGGAGAATATCGACAAGCTTATCCTAAA
GAGGCGCGTGAAGTGGATGCAATTATTGATGGAAAAGATCCTGTGGAAATCAAAGAAGCTGATTTTCCAGTCTACGAAAA
TGGCTTCTCTCAAGCAACGCGTAATTCTAGTCAAGATGCCATCAATGCTGCGGCAGACGTACTACCTAACTTTTTTGGAG
GCTCTGCTGACCTTGCGCATTCTAACATGACTTACATTAAAGCAGATGGGCTTCAAGATGCTGATAATCCGCTTAACCGT
AACATTCAGTTTGGTGTTCGTGAATTTGCTATGGGTACTGTCTTAAATGGTATGGCTCTTCATGGTGGACTGCGTGTTTA
TGGCGGTACCTTCTTTGTCTTTTCAGACTATCTCAAAGCAGCTGTTCGTTTGTCAGCTCTTCAAGGAGTACCAGTAACCT
ATGTCTTTACCCACGATTCGATTGCCGTTGGTGAAGATGGCCCTACTCATGAACCGATTGAACACTTGGCAGGTTTACGT
GCTACTCCTAATTTGGTTGTTTTTCGTCCAGCCGATGCACGCGAAACACAGGCAGCATGGCATTATGCTTTGACAAGCCA
AAACACACCAACAGCTCTTGTTTTGACACGTCAAAATCTTGATGTTGAAGCTGGTTCAAGCTTTACTTCAGTTGCTAAGG
GAGCTTATGTTACTTATGAAACAGATTCTGACTTTAATACCATTCTTTTGGCATCAGGTTCTGAAGTTAACTTAGCAGTC
AAAGCAGCTAAGGAATTGGAAGCACAAGGCGAAAAAGTACGTGTTGTTTCTGTTCCTTCTACAGAGCTCTTTGATGAGCA
ATCTGCTGCCTACAAAGAAGCTATTTTGCCAAATTCAGTACGCCGTCGTGTAGCCATTGAAATGGCAGCCAGCCAACCAT
GGTATAAATATGTTGGTCTTGATGGTGCGGTTATCGGTATTGATAAATTTGGAGCATCAGCTCCTGCTGCTCAAGTCATT
GAAAATTATGGCTTTACAGTAGATAATGTGGTTAAAGTTGTTAAGGGACTGAAATAG

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, C-terminal domain (Transketolase_C)

(546-650)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.3

99.848

0.792