Detailed information NTG0419823

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GSQ66_RS14480
• Genome accession: NZ_CP048106
• Coordinates: 3341600..3342979 (+)
• Length: 459 a.a.
• NCBI ID: WP_162428120.1
• Uniprot ID: -
• Organism: Pontibacter pudoricolor strain BT214
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3336600..3347979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSQ66_RS14465	-	3337102..3337821 (-)	720	WP_162428118.1	hypothetical protein	-
GSQ66_RS14470	-	3337843..3338325 (-)	483	WP_162428119.1	DUF962 domain-containing protein	-
GSQ66_RS19010	-	3338555..3339535 (+)	981	WP_238395704.1	CHASE domain-containing protein	-
GSQ66_RS14475	-	3339535..3341472 (+)	1938	WP_238395705.1	PAS domain S-box protein	-
GSQ66_RS14480	radA	3341600..3342979 (+)	1380	WP_162428120.1	DNA repair protein RadA	Machinery gene
GSQ66_RS14485	-	3343134..3344555 (+)	1422	WP_162428121.1	peroxiredoxin	-
GSQ66_RS14490	-	3345714..3346895 (+)	1182	WP_162428122.1	hypothetical protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50066.32 Da
• Isoelectric Point: 5.3894

>NTDB_id=419823 GSQ66_RS14480 WP_162428120.1 3341600..3342979(+) (radA) [Pontibacter pudoricolor strain BT214]
MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREELTPTSIWKVGSTSAQVASKPKPIADITFQEQQRIDTTD
QELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLRGMRVLYVSGEESEQQIKMRAERIGTATSDCFILTETGTQNI
FKQIEQLQPQVLIVDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQ
FEGDRHMTYRILRTTKNRFGSTSELGIYEMMGAGLREVSNPSEILISQREDAFSGIGIGATLEGNRPLLIEVQSLVTPAT
YGTPQRTSTGFDGKRLNMLLAVLEKRGGYRLGAQDVFLNIAGGLKVEDPALDLAVCASILSSFEDLAIPNTACFAAEVGL
GGEIRAVNRVENRISEAEKLGFTDIYISKYNKKGLDFSKFNIKVHAFSKLEDVFSELFG

Nucleotide

• Length: 1380 bp

>NTDB_id=419823 GSQ66_RS14480 WP_162428120.1 3341600..3342979(+) (radA) [Pontibacter pudoricolor strain BT214]
ATGGCTAAAATAAAAACCTCCTACTTCTGCCAGAACTGCGGCGCACAATCAGCAAAATGGATTGGCAAATGCCCGGCCTG
CGGCGAGTGGAACACCTACGTAGAAGAAGTAGTACAGCGCGAAGAACTGACCCCGACAAGCATCTGGAAAGTTGGAAGCA
CTTCGGCACAGGTGGCAAGTAAACCAAAACCAATTGCGGATATTACCTTTCAGGAGCAGCAGCGCATTGATACCACAGAC
CAGGAACTGAACCGCGTGTTAGGAGGCGGCATTGTGCCCGGCTCTATGGTGCTCATCGGTGGCGAACCAGGTATTGGTAA
ATCGACACTGATGCTGCAGATAGCGCTGAGTTTGCGGGGCATGCGGGTGTTGTATGTAAGCGGCGAAGAAAGCGAGCAGC
AGATCAAGATGCGTGCTGAGCGCATTGGTACAGCCACCTCCGACTGCTTTATATTAACCGAAACCGGGACACAGAATATC
TTTAAACAAATTGAGCAGCTGCAACCCCAGGTGCTTATAGTTGACTCTATACAAACCCTTCATTCGTCGTTTATAGAAGC
TGGCGCAGGAAGTGTGAGCCAGGTGCGTGAGTGCACGGCCGAGCTTTTAAAATTTGCCAAAGAAAGTGGTACGCCGGTTT
TCCTGATTGGCCACATCACCAAAGAAGGCAACCTGGCCGGCCCAAAGATTCTGGAGCACATGGTAGATACCGTGCTGCAG
TTTGAAGGCGACCGCCACATGACCTATCGTATTCTCCGCACTACTAAAAACCGCTTTGGCTCTACATCGGAGCTGGGTAT
TTATGAGATGATGGGCGCGGGCCTGCGCGAAGTGAGTAACCCATCCGAGATCCTGATTTCGCAGCGCGAAGATGCTTTCA
GCGGCATTGGTATTGGTGCTACGCTGGAAGGCAACAGGCCGCTTTTAATTGAAGTGCAGAGCCTGGTAACTCCTGCCACT
TACGGCACACCACAACGCACCAGCACCGGCTTCGATGGTAAACGTTTGAACATGCTGCTGGCCGTGCTGGAAAAACGGGG
TGGTTACAGGTTGGGTGCCCAGGATGTGTTCCTGAATATTGCCGGCGGCCTTAAAGTAGAAGATCCTGCCCTGGACCTGG
CAGTTTGCGCTTCCATCCTGTCATCGTTCGAAGATCTGGCAATACCAAACACGGCCTGTTTTGCTGCAGAAGTTGGCCTG
GGTGGCGAAATACGGGCTGTAAATCGCGTAGAGAACCGCATATCAGAAGCCGAAAAATTAGGATTTACCGACATCTACAT
CTCTAAATACAACAAGAAAGGGCTTGATTTTAGTAAGTTCAACATTAAGGTGCATGCCTTCAGTAAACTGGAAGATGTGT
TCAGTGAGTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (73-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	51.087	100	0.512
radA	Streptococcus pneumoniae Rx1	51.087	100	0.512
radA	Streptococcus pneumoniae D39	51.087	100	0.512
radA	Streptococcus pneumoniae TIGR4	51.087	100	0.512
radA	Streptococcus mitis NCTC 12261	51.087	100	0.512
radA	Streptococcus mitis SK321	50.87	100	0.51
radA	Bacillus subtilis subsp. subtilis str. 168	52.86	95.207	0.503