Detailed information NTG0419783

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: IBL27_RS03540
• Genome accession: NZ_CP061071
• Coordinates: 692449..695031 (+)
• Length: 860 a.a.
• NCBI ID: WP_024784332.1
• Uniprot ID: -
• Organism: Streptococcus mutans B04Sm5
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 687449..700031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBL27_RS03520 (IBL27_03520)	murT	687600..688943 (-)	1344	WP_002311188.1	lipid II isoglutaminyl synthase subunit MurT	-
IBL27_RS03525 (IBL27_03525)	cdaA	689052..689906 (+)	855	WP_002263112.1	diadenylate cyclase CdaA	-
IBL27_RS03530 (IBL27_03530)	-	689899..690855 (+)	957	WP_002265809.1	CdaR family protein	-
IBL27_RS03535 (IBL27_03535)	glmM	690906..692255 (+)	1350	WP_002311187.1	phosphoglucosamine mutase	-
IBL27_RS03540 (IBL27_03540)	clpC	692449..695031 (+)	2583	WP_024784332.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
IBL27_RS03545 (IBL27_03545)	lpdA	695260..696597 (+)	1338	WP_024784331.1	dihydrolipoyl dehydrogenase	-
IBL27_RS03550 (IBL27_03550)	-	696623..697696 (+)	1074	WP_002267204.1	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	-
IBL27_RS03555 (IBL27_03555)	-	697709..698740 (+)	1032	WP_002265812.1	alpha-ketoacid dehydrogenase subunit beta	-
IBL27_RS03560 (IBL27_03560)	-	698754..700007 (+)	1254	WP_002309039.1	dihydrolipoamide acetyltransferase family protein	-

Sequence

Protein

• Length: 860 a.a.
• Molecular weight: 97974.40 Da
• Isoelectric Point: 6.1033

>NTDB_id=419783 IBL27_RS03540 WP_024784332.1 692449..695031(+) (clpC) [Streptococcus mutans B04Sm5]
MIDKMTQLVEDSLEEAKELAIAHRNYQLDIPHLWAVLVKPDQFAFQFYQSLEINTNQLIEIINKEIDKIPVLSSTEKSSY
ARLYSQRLKNLLDDAHQEMIDLKDQVLTVEHLILALFNQQRNPITVFLLEQGLNKEKLYQKMHRIRKGKSAISSSQETIY
DALEKYAVNLNQRALDEPVNKIIGRQDEMNDIIRILSRKNKNNTILVGHSGVGKAAIIEGFVQRLVKNQVPKNLQGKVIY
SLDIGALLAGTKYRGEFEERFKALLNDIIDSNGQIILFIDEIHSIVSAGRTEGSVDAASILKPLLARGKIRIIGSTTHAE
YRESIEYDRALERRFQRILVHEPDLDYTMEILKGLKPIYENFHGVRLEEDSLEAAASLSKRYISDRFLPDKALDLIDEAC
AAKRLASHAYPVQMTNLSQQLISEKIRLLRLTDSDTDDKFKLNSHLEQLEEQKSQLLANWQSERELLDQVQELRSHLTAL
EEQANLALENNQVADYVRLEDEEIKICHQKMTALEKERLDSQKIINVTVTREDIAAVVERLTGIKVQGVMENERDRLLHL
EELLHQKIVGQDQAVQKVSQAIIRSRAGIQNPKRPIGSFLFLGPTGVGKTALAKRLAEVLFGSELEMVRLDMSEYMEKHA
VARLVGPPPGYVGYEEGGQLTEAVRQRLYSIVLLDEIEKAHPDVFNTLLQVLDEGRLTDSKGRTIDFKNTILIMTSNIGS
TNILQSLQDSGCITSEVRHKVLDELNHSFRPEFLNRIDETVLFNALSEKDMTGVVKVMVSDLQARLLEQDIHLTLTESVY
TLLAKEGFDAAFGARPMQRTIMQKLENPLALYLIQNQKNKEKETFVTVSVKDKKLKFTFS

Nucleotide

• Length: 2583 bp

>NTDB_id=419783 IBL27_RS03540 WP_024784332.1 692449..695031(+) (clpC) [Streptococcus mutans B04Sm5]
ATGATCGATAAAATGACTCAGTTAGTTGAAGATTCTTTAGAAGAAGCAAAGGAATTGGCTATTGCTCATCGTAATTATCA
GCTGGACATTCCCCATTTATGGGCTGTCTTGGTAAAACCTGATCAATTTGCTTTTCAATTCTATCAATCTTTAGAAATAA
ATACCAATCAGCTGATTGAGATTATCAATAAGGAAATAGATAAAATCCCAGTCCTTTCAAGTACAGAAAAAAGCAGTTAT
GCACGTTTATACAGTCAGCGTTTAAAAAATTTATTGGATGACGCGCATCAGGAAATGATTGATTTAAAGGATCAGGTGCT
GACTGTAGAACACTTGATCTTGGCACTTTTTAACCAACAACGCAATCCCATTACTGTTTTTTTGCTTGAACAGGGTCTAA
ACAAAGAAAAACTTTATCAAAAGATGCATAGGATTCGTAAAGGGAAATCTGCTATTTCTTCCAGTCAAGAAACTATTTAT
GATGCTTTAGAAAAGTATGCTGTCAACTTAAATCAGCGTGCTTTAGATGAACCTGTTAATAAAATTATTGGCCGTCAGGA
TGAAATGAATGATATTATTCGTATTTTATCACGTAAGAATAAGAATAATACCATTTTAGTTGGTCATTCAGGTGTTGGGA
AAGCAGCCATTATTGAAGGATTTGTTCAGCGGTTAGTTAAAAATCAAGTTCCGAAAAATTTGCAAGGTAAGGTCATTTAC
AGTCTTGACATAGGAGCCTTGCTGGCAGGAACTAAATACCGCGGTGAATTTGAAGAACGTTTCAAAGCTCTTCTCAATGA
TATTATAGACTCAAACGGTCAGATTATTCTTTTCATAGATGAAATTCATTCTATTGTCAGTGCAGGACGGACAGAGGGTT
CTGTTGATGCGGCCAGTATTTTGAAGCCGCTTTTGGCTAGAGGGAAAATTAGAATTATTGGTTCCACTACTCATGCAGAA
TACCGTGAAAGTATTGAATACGATAGGGCGTTAGAAAGGCGTTTTCAAAGGATCTTAGTTCATGAACCAGATCTTGATTA
TACCATGGAAATTCTTAAAGGTCTCAAGCCCATTTATGAAAATTTTCATGGTGTCAGACTTGAAGAAGATAGCTTGGAAG
CTGCCGCAAGCTTGTCCAAGCGTTATATTTCTGATCGCTTTTTGCCAGATAAGGCTCTGGATTTAATTGACGAAGCCTGT
GCTGCTAAGCGGCTTGCTTCTCATGCTTATCCCGTGCAAATGACCAATTTGTCTCAGCAACTTATTTCTGAGAAAATTCG
TTTATTGCGTTTGACCGATTCTGACACTGACGATAAGTTTAAATTAAACAGTCATCTTGAGCAATTAGAGGAGCAAAAAA
GCCAATTATTAGCAAATTGGCAAAGTGAAAGAGAGCTCCTAGATCAGGTACAAGAGCTTCGTTCACACTTAACGGCTTTA
GAAGAGCAGGCTAATCTTGCTCTTGAAAATAATCAAGTCGCAGATTATGTCCGTCTAGAAGATGAGGAAATAAAGATATG
TCATCAAAAGATGACAGCTTTAGAAAAGGAACGTTTAGACAGCCAGAAGATAATTAATGTTACTGTGACTAGAGAAGATA
TAGCAGCTGTTGTTGAACGCTTGACAGGCATCAAAGTACAGGGTGTTATGGAAAACGAGCGTGATCGTCTCTTGCACTTA
GAAGAATTATTGCACCAAAAAATTGTTGGTCAAGATCAAGCCGTACAAAAGGTATCTCAGGCCATCATTCGCTCTCGTGC
TGGCATTCAAAACCCTAAACGTCCAATTGGCTCCTTCCTCTTTTTGGGACCGACTGGTGTGGGGAAAACAGCGCTTGCTA
AACGTTTGGCGGAAGTTCTTTTTGGCAGTGAACTTGAGATGGTGCGTCTCGATATGTCTGAATATATGGAAAAACATGCT
GTCGCACGTTTAGTAGGACCACCACCAGGTTATGTCGGATATGAAGAAGGAGGCCAATTAACCGAGGCTGTTCGTCAGCG
TTTATACTCTATCGTCCTACTTGATGAGATTGAAAAAGCTCATCCTGATGTTTTTAATACCTTACTGCAGGTTTTAGATG
AAGGGCGTTTGACGGATTCAAAAGGGCGAACCATTGATTTTAAAAATACCATCTTAATTATGACCAGCAATATTGGCTCA
ACCAATATTTTACAAAGTCTGCAAGATAGTGGCTGCATTACTTCAGAAGTCCGTCATAAAGTTCTAGATGAGCTGAATCA
CAGTTTCAGACCAGAGTTTCTTAATCGGATTGATGAGACGGTACTCTTTAATGCTCTTTCTGAAAAAGATATGACAGGTG
TTGTTAAGGTCATGGTTTCTGATTTGCAAGCTCGCCTCTTAGAACAAGATATTCATCTGACATTGACTGAATCGGTTTAT
ACCCTCTTAGCTAAAGAAGGTTTTGATGCAGCTTTTGGTGCCAGACCCATGCAGAGGACAATTATGCAAAAGTTAGAAAA
CCCTTTGGCTTTATATCTTATTCAAAATCAGAAAAATAAAGAAAAAGAGACTTTTGTGACAGTATCTGTTAAGGATAAGA
AACTCAAATTCACATTCTCATAG

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (346-435)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-338)

• AAA domain (Cdc48 subfamily) (AAA_2) (594-759)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-144)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (16-66)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-842)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	40.556	100	0.407
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.288	100	0.384