Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IBL27_RS03340 Genome accession   NZ_CP061071
Coordinates   649291..651495 (+) Length   734 a.a.
NCBI ID   WP_002278294.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 644291..656495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS03310 (IBL27_03310) - 644384..644560 (-) 177 WP_002263068.1 DUF3042 family protein -
  IBL27_RS03315 (IBL27_03315) miaA 644635..645519 (+) 885 WP_002308651.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  IBL27_RS03320 (IBL27_03320) hflX 645707..646954 (+) 1248 WP_002308650.1 GTPase HflX -
  IBL27_RS03325 (IBL27_03325) - 646941..647576 (+) 636 WP_002308648.1 hypothetical protein -
  IBL27_RS03330 (IBL27_03330) rnz 647604..648533 (+) 930 WP_002308647.1 ribonuclease Z -
  IBL27_RS03335 (IBL27_03335) - 648530..649294 (+) 765 WP_002263858.1 SDR family NAD(P)-dependent oxidoreductase -
  IBL27_RS03340 (IBL27_03340) recJ 649291..651495 (+) 2205 WP_002278294.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IBL27_RS03345 (IBL27_03345) - 651615..652514 (+) 900 WP_002308646.1 helix-turn-helix transcriptional regulator -
  IBL27_RS03350 (IBL27_03350) - 652767..653399 (+) 633 WP_002308644.1 GyrI-like domain-containing protein -
  IBL27_RS03355 (IBL27_03355) - 653729..653941 (+) 213 WP_002267746.1 ClbS/DfsB family four-helix bundle protein -
  IBL27_RS03360 (IBL27_03360) - 654073..654591 (+) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  IBL27_RS03365 (IBL27_03365) metA 654695..655639 (+) 945 WP_002266212.1 homoserine O-acetyltransferase MetA -
  IBL27_RS03370 (IBL27_03370) - 655649..656344 (+) 696 WP_002277650.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82412.18 Da        Isoelectric Point: 4.4751

>NTDB_id=419781 IBL27_RS03340 WP_002278294.1 649291..651495(+) (recJ) [Streptococcus mutans B04Sm5]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGLAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRDFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNRIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAQKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=419781 IBL27_RS03340 WP_002278294.1 649291..651495(+) (recJ) [Streptococcus mutans B04Sm5]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCCTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGCCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTCATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTCGTTCATCC
TGAACATCCAGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAGATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAGCGCGTCGGTCTGCAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACCATTGGTTTCAAGTTAGCACCTCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTCTGGTTGATGAGAACAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCCTTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCTTTTGGAGGCCATGCTGGAGCTGCGGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGTTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGCTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGGATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATTTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTCTTTGATCTCCTTGCCTTTAACTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCACTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATAGGATTAAGCATCAATATTATTTAACAGGATCTGGAACGCGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTACCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTCAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGATTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAGGAAATATATGAATTTTTAAAACGCGATCGCTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-729)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

65.082

100

0.653
  recJ Bacillus subtilis subsp. subtilis str. 168

37.597

100

0.396