Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   IBL27_RS03205 Genome accession   NZ_CP061071
Coordinates   622235..625873 (+) Length   1212 a.a.
NCBI ID   WP_002308033.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 617235..630873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS03190 (IBL27_03190) - 617387..617713 (+) 327 WP_002266136.1 hypothetical protein -
  IBL27_RS03195 (IBL27_03195) - 617888..618133 (+) 246 WP_002262921.1 SemiSWEET family transporter -
  IBL27_RS03200 (IBL27_03200) rexB 619003..622245 (+) 3243 WP_002308034.1 ATP-dependent nuclease subunit B Machinery gene
  IBL27_RS03205 (IBL27_03205) rexA 622235..625873 (+) 3639 WP_002308033.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  IBL27_RS03210 (IBL27_03210) lacR 626098..626853 (+) 756 WP_002265225.1 transcriptional regulator LacR -
  IBL27_RS03215 (IBL27_03215) lacA 627161..627589 (+) 429 WP_002262463.1 galactose-6-phosphate isomerase subunit LacA -
  IBL27_RS03220 (IBL27_03220) lacB 627615..628130 (+) 516 WP_002262464.1 galactose-6-phosphate isomerase subunit LacB -
  IBL27_RS03225 (IBL27_03225) lacC 628149..629081 (+) 933 WP_024784365.1 tagatose-6-phosphate kinase -
  IBL27_RS03230 (IBL27_03230) lacD 629086..630066 (+) 981 WP_002281424.1 tagatose-bisphosphate aldolase -
  IBL27_RS03235 (IBL27_03235) - 630083..630556 (+) 474 WP_002265223.1 PTS sugar transporter subunit IIA -
  IBL27_RS03240 (IBL27_03240) - 630571..630873 (+) 303 WP_002265222.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139088.79 Da        Isoelectric Point: 4.8561

>NTDB_id=419780 IBL27_RS03205 WP_002308033.1 622235..625873(+) (rexA) [Streptococcus mutans B04Sm5]
MTFKPFLTDQEVASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFT
VKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYALGISPNFRILQDKSEQDLLK
NDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV
KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVT
VAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFILDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIR
QLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
SQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNKISLGEVKLV
AKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL
RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITGALSAKLDAFFETFLSWREFSLLNSLYDLIWKI
YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKG
LEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL
YVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG
SLEAEQAYDADNLKDNRQSDDIARALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKF
ELPQFSKKAGQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV
YREAPFAMLQADPASGEDYAVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI
LLGGEKLEVVEI

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=419780 IBL27_RS03205 WP_002308033.1 622235..625873(+) (rexA) [Streptococcus mutans B04Sm5]
ATGACCTTTAAACCATTTTTAACAGATCAAGAAGTAGCTTCCTTACAAATTCAAGAAGCTCAGTCTGATAAGAAACAAAA
ACGAACGCCTGAGCAAATTGAGGCTATTTACACTTCAGGAACCAATATTTTGGTTTCTGCCTCTGCTGGTTCAGGAAAAA
CCTTTGTGATGATTGAGCGGATTATGGATAAAATTCTGCGTGGTGTAACGATTGATCAGCTTTTTATTTCCACCTTTACC
GTTAAGGCTGCTGGTGAGCTTAAGGAGCGTTTAGAAAAGAAAATCACCGAGCAATTGCGTTTGACAAATGACACTGCCCT
CAAACAATTTCTCAGCGAACAACTCTTGGGATTGCAGACTGCGGATATTGGAACCATGGATGCCTTTACCCAAAAATTAG
TGACACAGTACGGCTATGCCTTGGGAATTTCACCGAATTTTCGAATTTTACAAGATAAAAGCGAGCAGGATCTTCTTAAA
AATGATGTCTTTGACGACCTTTTTACTGATTACAGAACTGGCGATCAAGCAGAGCTTTTCACTAAGCTTGTTAGGAATTT
TGCTGGAAATCGAAAAGATTCGAGCAATTTTAGACAAATCATTTACAAAATTTATGATTTCAGTCAGGCAACCGATAATC
CCCAAAGATGGCTTTTGGAGAATTTCTTAAAAGGAGCCAATACCTATAAGGATTTTTCAGCTATTCCTGAACAAGAAGTG
AAAGACTTTTTGAATACTTTGCAGGAAACTGCTCTCGCTCTTCGTGATGTGACGGATTTAGAAGATTACAAGCAAGTAAC
GGCTAAAGGAACTCCAACAGCAGCTTATCAAAGGCACCTTAAAATGATTGAGCAGCTGCAGGATTGGGTCTTGCATTTTG
ACAGTCTATATGGGCGAGATGGTCTGGGGAAATTAGCAAATGACATTGCAACACTCATTCCATCTGGTAACGATGTGACA
GTAGCAGGAGTTAAATATCCTGTCTTTCGCAGTTTGCACAGTCGCTTAAGAGGACTAAAACACTTGGAAACAATTTTCAA
GTATCAGGATCAAAGTCTGCCTTTGTTGCAAGTACTGCAATCTTTTATCCTTGATTTTTCAAAACAATACCTGCAAGCAA
AGATGCAGGAAAATGCCTTTGAGTTTTCAGACATTGCACATTTTGCTATCCAGATTTTAGAAGAAAATGATGCTATTCGT
CAGCTTTATATAGATAAGTATCACGAAGTCATGGTAGATGAATATCAGGATAATAATCACACCCAAGAGCGCATGTTGGA
ACTTTTATCTAATGGGCGCAATCGCTTCATGGTAGGAGATATTAAGCAGTCTATCTATCGGTTTCGTCAGGCAGATCCAC
AGATTTTTAATCAAAAATTTAAGGATTTTCAAGAACATCCAGAGCATGGAAAACTCATTCTCTTAAAAGAAAACTTTCGG
AGTCAGTCAGAAGTCTTAGATGCTACCAATAGTGTTTTTACGCACCTTATGGATGAAACGGTTGGAGAAATTCTCTACGA
TGATACCCATCAGCTTGTGGCTGGCAGTTCAGCTCAGAAAATTCCTTATCCGCAAAATGAAACACAAGTCCTCATCTATG
ATACAAAGGATCAGCAAAATCAAGATCTTGCTGTAGAAGATGATAGTAATAAAATCAGTCTAGGTGAGGTCAAATTGGTT
GCTAAGGAGATTATTCGCCTTCATAATGAAGAAAAGGTTCAGTTTGAAGATATTACCTTGCTTGTCTCATCGCGGACACG
CAATGACGGTATCTTGCAAACCTTTGATGATTATGGCATTCCTTTGGTGACTGATGGTGGTGAACAAAACTATCTGAAAT
CAGTGGAAGTTATGGTCATGTTGGATACTCTGCGTTCTATTGATAATCCTCTCAATGATTATGCTCTAGTAGCTCTTTTG
CGTTCACCTATGTTTGCTTTTGATGAGGATGACTTGGCTCGTCTAGCTCTGCAAAATCTACCAGATCAACACAAACAAAA
TCTTTATGAAAAGATGGAGAATGCCAGAAATGGCCAAGGCCAGCAAGTTCAGCTGATCACAGGAGCATTGTCTGCCAAAT
TGGATGCTTTCTTTGAAACTTTCCTCAGTTGGCGTGAGTTTAGTCTCTTAAATTCGCTCTATGATTTGATTTGGAAAATT
TATAATGATAAGTTTTACTATGATTATGTGGGAAGTTTACCAAAATCTGAACAGCGCCAAGCCAATCTTTATGCTCTAGC
CCTGCGTGCCGATAACTTTGAGAAAACAGGTTTTAAGGGCTTGTCGCGCTTCATTCGCATGATTGACAAAATTCTAGAAA
ATCAAAATGACTTGGCTGATGTTGAAGTCGCTTTACCTAAAAATGCAGTGACGCTGATGACGATTCATAAGAGTAAGGGA
TTGGAATTTAAATATGTCTTTATTCTTAATATTGATAAAAAATTTAGCATTCAAGATATGACATCACCCTTAATCTTATC
GCGGCAAAACGGTGTTGGTATCAAGTATATTGCTGATATGAAAGAAGAACTAGAGGAAAAATTATTGCCGACAGTTAAAG
TCAGCATGGATACTCTTCCTTATCAACTGAATAAGCGTGAGCTTCGCCTGGCAACCCTATCTGAACAAATGCGATTGCTT
TATGTTGCCATGACACGATCTGAAAAGAAACTTTACTTGGTCGGAAAAGGCAGTCAGGAAAAATTAGGGGATCAGTATGA
TGGCAAATCAGAAAACAATCATTTGCCAGTAGCTGATCGTGAACACTATTTGACTTTTCAGGATTGGCTTTTGGCGATTG
AAGCTGCTTATGCTGCCGATGAACTTCATTTTAAAACAAGTTTTATAACGGATGAAGACTTAACAGAAGATAAAATGGGA
AGTTTAGAAGCAGAGCAGGCTTATGATGCGGATAATCTTAAGGATAATCGGCAATCAGATGATATTGCGCGTGCTTTAGA
TATGTTAGAAGCAGTTGAAAAATTAAATCAGCACTATAAGGCTGCTATCCATTTACCAACTGTTCGTACGCCAAGTCAGA
TCAAAAAATTTTATGAGCCTGTTATGGAAACAGAAGGTGTAGAGGTGATGCAAACTTCCTATCAGACTAAACCAAAGTTT
GAGCTGCCTCAATTTTCAAAAAAGGCAGGACAAGATCCAACAGCTCTTGGTTCAAGTGTTCATGAACTTATGCAGCGGCT
TCATTTGAGTGAACAGGTTAGTCTTGAAGATATTTTAACTGCTCTGGCAGAACTATCTGTAGAAGAAAATGTTAAAAAAG
CTATTCAGGTTGATAAGATTTTGCATTTCTTCCAGACCAGCCAACTGGGGAAACTCATTCAAGCAAATGCTGACAAGGTC
TATCGTGAAGCACCCTTTGCTATGCTGCAAGCGGATCCTGCAAGCGGAGAAGACTATGCCGTGCGGGGGATTATTGACGG
TTACATTCTTTTTGATAATCGGATTGTCCTCTTTGATTATAAAACAGATAAATTCACTAATAGTCAAGCTATTAAAGAGC
GTTACCGAGGTCAGATGACACTTTATGCTCAAGCTTTGAGCCAATCCTATAATATCCAACAAGTAGACAGTTATTTAATT
CTATTAGGCGGTGAAAAATTAGAAGTTGTGGAAATTTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(473-893)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1041-1191)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.606

100

0.533