Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   IBL27_RS01525 Genome accession   NZ_CP061071
Coordinates   303078..303764 (-) Length   228 a.a.
NCBI ID   WP_002268420.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 298078..308764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS01495 (IBL27_01495) - 300085..300255 (-) 171 WP_002308751.1 hypothetical protein -
  IBL27_RS01500 (IBL27_01500) - 300560..300805 (+) 246 WP_002263367.1 hypothetical protein -
  IBL27_RS01505 (IBL27_01505) rpsF 300961..301251 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  IBL27_RS01510 (IBL27_01510) - 301269..301763 (+) 495 WP_002261867.1 single-stranded DNA-binding protein -
  IBL27_RS01515 (IBL27_01515) rpsR 301793..302032 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  IBL27_RS01520 (IBL27_01520) - 302351..303070 (+) 720 WP_002309022.1 TraX family protein -
  IBL27_RS01525 (IBL27_01525) hdrM 303078..303764 (-) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  IBL27_RS01530 (IBL27_01530) hdrR 303761..304117 (-) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  IBL27_RS01535 (IBL27_01535) - 304256..304918 (-) 663 WP_002282225.1 DUF1129 domain-containing protein -
  IBL27_RS01540 (IBL27_01540) - 305200..306144 (-) 945 WP_024784412.1 magnesium transporter CorA family protein -
  IBL27_RS01545 (IBL27_01545) - 306544..306765 (-) 222 WP_019312622.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26101.17 Da        Isoelectric Point: 6.7581

>NTDB_id=419763 IBL27_RS01525 WP_002268420.1 303078..303764(-) (hdrM) [Streptococcus mutans B04Sm5]
MKKNYFWYGLLGLLALYLITIAFIPGFHIFFSNMLMLALFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFT
GIIIIGVILNSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGEQSVDLSQAQ
FMTDSPEIHIDISFGETNLRIPNNWKIINKTHSPFASISFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=419763 IBL27_RS01525 WP_002268420.1 303078..303764(-) (hdrM) [Streptococcus mutans B04Sm5]
ATGAAAAAAAATTATTTTTGGTACGGTCTGCTTGGGCTTCTCGCACTTTACCTTATTACTATTGCTTTTATCCCGGGATT
TCATATTTTCTTTAGCAACATGTTGATGTTGGCCCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTT
TCTTTCTAGCCTTAGGTTTTCTTAGTATCTACTTGAAAGATATCTTTCATTTTGACTATTCTACCGGACCGCTTTTTACG
GGTATAATCATTATCGGCGTTATTTTAAATAGTTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTT
TAATATGAAACAAAATGCTAACTACATTGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTT
ATGTGACTTCTCAAGAATTAAATAAAATTATTATTGATACTAAGTTTGGAGAACAATCTGTTGATCTCTCTCAAGCTCAA
TTTATGACAGATTCTCCCGAAATTCATATAGATATTAGCTTTGGTGAAACCAATCTGCGTATTCCAAACAACTGGAAAAT
CATCAATAAAACTCACTCCCCCTTTGCTTCCATTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAACGTTA
CATTGACTGGAACAGTGGCTATGGGATCTCTAAACATTCAATATTAA

Domains

Predicted by InterProScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(128-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

99.123

100

0.991