Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IBL27_RS00500 Genome accession   NZ_CP061071
Coordinates   99544..100020 (-) Length   158 a.a.
NCBI ID   WP_002308370.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 94544..105020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS00475 (IBL27_00475) - 94614..95423 (-) 810 WP_002310879.1 formate/nitrite transporter family protein -
  IBL27_RS00480 (IBL27_00480) tig 95661..96944 (+) 1284 WP_002276578.1 trigger factor -
  IBL27_RS00485 (IBL27_00485) - 97155..97865 (-) 711 WP_002268615.1 class I SAM-dependent methyltransferase -
  IBL27_RS09830 - 98109..98462 (-) 354 WP_002308372.1 hypothetical protein -
  IBL27_RS00495 (IBL27_00495) gap 98506..99519 (-) 1014 WP_002277776.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  IBL27_RS00500 (IBL27_00500) luxS 99544..100020 (-) 477 WP_002308370.1 S-ribosylhomocysteine lyase Regulator
  IBL27_RS00505 (IBL27_00505) - 100021..100944 (-) 924 WP_002308368.1 DMT family transporter -
  IBL27_RS00510 (IBL27_00510) - 101071..101544 (+) 474 WP_024784358.1 RrF2 family transcriptional regulator -
  IBL27_RS00515 (IBL27_00515) - 101588..102709 (+) 1122 WP_002277779.1 MFS transporter -
  IBL27_RS00520 (IBL27_00520) - 103112..103621 (+) 510 WP_002283073.1 hypothetical protein -
  IBL27_RS00525 (IBL27_00525) - 103803..104394 (+) 592 Protein_84 replication protein -
  IBL27_RS00530 (IBL27_00530) - 104381..104602 (+) 222 WP_002268624.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17902.35 Da        Isoelectric Point: 7.9517

>NTDB_id=419739 IBL27_RS00500 WP_002308370.1 99544..100020(-) (luxS) [Streptococcus mutans B04Sm5]
MARVESFELDHTKVRAPYVRKIDTQVGEKGDSISNFDIRLVQPNQSAIPSGGIHTIEHSLASLIRNRIDGVIDSSPFGCR
TGFHLIIWGNHTSKEIALVIKESLKEMVSDEFRWENVPGISERQCGNYRDHSLFTAKEWGKQILRQGISSDPFLRKIV

Nucleotide


Download         Length: 477 bp        

>NTDB_id=419739 IBL27_RS00500 WP_002308370.1 99544..100020(-) (luxS) [Streptococcus mutans B04Sm5]
ATGGCAAGAGTAGAAAGTTTCGAATTAGATCACACTAAAGTTCGTGCTCCATATGTTCGCAAAATTGATACACAAGTTGG
AGAAAAAGGAGATTCTATTAGTAATTTTGATATAAGGCTTGTTCAACCTAATCAAAGTGCTATTCCGAGTGGGGGAATTC
ATACTATTGAACACTCTCTTGCAAGTCTTATTAGAAATCGTATCGATGGAGTAATAGATTCTTCTCCATTCGGATGTCGA
ACAGGATTTCATCTTATTATTTGGGGAAATCACACATCAAAAGAGATTGCTTTAGTGATAAAAGAATCTCTAAAAGAAAT
GGTAAGTGATGAATTCCGTTGGGAAAATGTTCCTGGTATTTCAGAAAGACAATGTGGTAATTATAGAGACCATTCACTTT
TTACAGCAAAGGAATGGGGAAAACAAATTTTGAGACAGGGAATATCAAGTGATCCATTTTTACGTAAAATTGTATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.562

96.835

0.373