Detailed information NTG0041969

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I02_RS15015
• Genome accession: NC_017651
• Coordinates: 3038323..3039315 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli str. 'clone D i2'
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3033323..3044315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I02_RS14995 (i02_3029)	ygbM	3033954..3034730 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
I02_RS15000 (i02_3030)	ygbN	3034819..3036183 (+)	1365	WP_000104433.1	GntP family transporter	-
I02_RS15005 (i02_3031)	-	3036326..3037369 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
I02_RS15010 (i02_3033)	-	3037594..3038145 (+)	552	WP_001179443.1	flavodoxin family protein	-
I02_RS15015 (i02_3034)	rpoS	3038323..3039315 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I02_RS15020 (i02_3035)	nlpD	3039378..3040472 (-)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
I02_RS15025 (i02_3037)	pcm	3040657..3041283 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I02_RS15030 (i02_3038)	surE	3041277..3042038 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I02_RS15035 (i02_3039)	truD	3042019..3043068 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I02_RS15040 (i02_3040)	ispF	3043065..3043544 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I02_RS15045 (i02_3041)	ispD	3043544..3044254 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=41969 I02_RS15015 WP_000081550.1 3038323..3039315(-) (rpoS) [Escherichia coli str. 'clone D i2']
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=41969 I02_RS15015 WP_000081550.1 3038323..3039315(-) (rpoS) [Escherichia coli str. 'clone D i2']
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715