Detailed information NTG0419651

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EBO27_RS06780
• Genome accession: NZ_CP061034
• Coordinates: 1450740..1451744 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1445740..1456744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBO27_RS06750 (EBO27_06750)	fghA	1445837..1446688 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
EBO27_RS06755 (EBO27_06755)	ispF	1446759..1447232 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EBO27_RS06760 (EBO27_06760)	truD	1447229..1448296 (+)	1068	WP_029610725.1	tRNA pseudouridine(13) synthase TruD	-
EBO27_RS06765 (EBO27_06765)	surE	1448284..1449033 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EBO27_RS06770 (EBO27_06770)	-	1449066..1449701 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EBO27_RS06775 (EBO27_06775)	-	1449747..1450640 (+)	894	WP_029610726.1	peptidoglycan DD-metalloendopeptidase family protein	-
EBO27_RS06780 (EBO27_06780)	rpoS	1450740..1451744 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EBO27_RS06785 (EBO27_06785)	fdxA	1452171..1452494 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EBO27_RS06790 (EBO27_06790)	mutS	1452561..1455128 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EBO27_RS06795 (EBO27_06795)	-	1455254..1456261 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=419651 EBO27_RS06780 WP_003113871.1 1450740..1451744(+) (rpoS) [Pseudomonas aeruginosa strain PA3]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=419651 EBO27_RS06780 WP_003113871.1 1450740..1451744(+) (rpoS) [Pseudomonas aeruginosa strain PA3]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGAACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653