Detailed information
Bioinformatically predicted
Overview
| Name | recU | Type | Machinery gene |
| Locus tag | IBC03_RS01325 | Genome accession | NZ_CP061025 |
| Coordinates | 240238..240834 (-) | Length | 198 a.a. |
| NCBI ID | WP_002949408.1 | Uniprot ID | Q5M648 |
| Organism | Streptococcus thermophilus strain 13496 | ||
| Function | plasmid transformation; homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 235238..245834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBC03_RS01315 (IBC03_01320) | - | 236597..237853 (+) | 1257 | WP_011681055.1 | ISL3-like element ISSth1 family transposase | - |
| IBC03_RS01320 (IBC03_01325) | pbp1a | 237929..240238 (-) | 2310 | WP_138496674.1 | penicillin-binding protein PBP1A | - |
| IBC03_RS01325 (IBC03_01330) | recU | 240238..240834 (-) | 597 | WP_002949408.1 | Holliday junction resolvase RecU | Machinery gene |
| IBC03_RS01330 (IBC03_01335) | - | 240911..241426 (+) | 516 | WP_002949411.1 | DUF1273 domain-containing protein | - |
| IBC03_RS01335 (IBC03_01340) | gpsB | 241535..241867 (+) | 333 | WP_014607932.1 | cell division regulator GpsB | - |
| IBC03_RS01345 (IBC03_01350) | - | 242404..243570 (+) | 1167 | WP_014607933.1 | class I SAM-dependent RNA methyltransferase | - |
| IBC03_RS01350 (IBC03_01355) | - | 243573..245435 (+) | 1863 | WP_014607934.1 | cell division site-positioning protein MapZ family protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 22827.38 Da Isoelectric Point: 10.1106
>NTDB_id=419544 IBC03_RS01325 WP_002949408.1 240238..240834(-) (recU) [Streptococcus thermophilus strain 13496]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT
Nucleotide
Download Length: 597 bp
>NTDB_id=419544 IBC03_RS01325 WP_002949408.1 240238..240834(-) (recU) [Streptococcus thermophilus strain 13496]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAGGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAGGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recU | Bacillus subtilis subsp. subtilis str. 168 |
49.754 |
100 |
0.51 |