Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GWK91_RS13695 Genome accession   NZ_CP048021
Coordinates   2812634..2814001 (+) Length   455 a.a.
NCBI ID   WP_044153382.1    Uniprot ID   A0A6B9YHN5
Organism   Virgibacillus sp. MSP4-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2807634..2819001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK91_RS13675 (GWK91_13670) - 2807914..2808378 (+) 465 WP_044153387.1 CtsR family transcriptional regulator -
  GWK91_RS13680 (GWK91_13675) - 2808394..2808942 (+) 549 WP_044153386.1 UvrB/UvrC motif-containing protein -
  GWK91_RS13685 (GWK91_13680) - 2808942..2810009 (+) 1068 WP_044153384.1 protein arginine kinase -
  GWK91_RS13690 (GWK91_13685) clpC 2810025..2812457 (+) 2433 WP_044153383.1 ATP-dependent protease ATP-binding subunit ClpC -
  GWK91_RS13695 (GWK91_13690) radA 2812634..2814001 (+) 1368 WP_044153382.1 DNA repair protein RadA Machinery gene
  GWK91_RS13700 (GWK91_13695) - 2814355..2815455 (+) 1101 WP_044153381.1 PIN/TRAM domain-containing protein -
  GWK91_RS13705 (GWK91_13700) ispF 2815625..2816737 (+) 1113 WP_238389677.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GWK91_RS13710 (GWK91_13705) gltX 2816805..2818271 (+) 1467 WP_044153379.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49835.25 Da        Isoelectric Point: 7.1009

>NTDB_id=419516 GWK91_RS13695 WP_044153382.1 2812634..2814001(+) (radA) [Virgibacillus sp. MSP4-1]
MAKPKVKFVCQECGYESPKWMGKCPACQTWNTLVEEKEITNTRQTVSGGSQKASKPERITGIAIQEEKRIATQMPEFNRV
LGGGIVPGSLVLIGGDPGIGKSTLLLQISAQMAQKGLDILYISGEESVRQTKLRADRLQINSDRLYVMAETNLQQLANAI
YDMKPSLVVVDSIQTVYHSEITSAPGSVSQVRESTSELMRIAKQNGIPVFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGE
RHHTFRIVRSVKNRFGSTHEMGIFEMKEEGLTEVLNPSEIFLEERSSGVAGSTIVASMEGTRPVLVEIQALISPTSFGNP
RRMATGLSQNRVHLLMAVLEKRAGLLLQNQDAYIKVAGGIKLDEPAIDLAIAVSIASSFREKSPRPDDILIGEVGLTGEV
RRVSRIEQRVQEASKLGFKRAIVPNNNLSGWDPPSSIEVVGVDSIQDALKVTFET

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=419516 GWK91_RS13695 WP_044153382.1 2812634..2814001(+) (radA) [Virgibacillus sp. MSP4-1]
ATGGCTAAACCCAAAGTGAAATTTGTCTGTCAGGAATGTGGATATGAATCGCCAAAATGGATGGGGAAATGTCCCGCCTG
TCAGACGTGGAATACATTAGTAGAAGAAAAGGAAATAACCAATACACGTCAGACGGTTTCCGGCGGCTCACAGAAGGCGA
GCAAGCCTGAACGTATAACAGGTATTGCCATACAGGAGGAAAAACGCATTGCCACTCAAATGCCGGAGTTTAACAGAGTT
TTGGGTGGAGGAATTGTACCGGGATCCCTGGTTTTAATCGGTGGTGATCCGGGAATAGGGAAATCAACCCTCCTATTGCA
GATTTCTGCTCAGATGGCCCAAAAAGGACTGGATATTTTATACATATCAGGTGAAGAATCCGTTCGTCAAACGAAGCTTC
GGGCAGACCGGCTTCAGATAAATTCCGACCGACTCTATGTAATGGCTGAAACAAATTTACAGCAGCTAGCGAATGCAATA
TATGATATGAAGCCCTCTCTTGTAGTGGTAGATTCTATTCAAACCGTCTATCATAGTGAGATCACTTCAGCTCCTGGGAG
TGTTTCTCAAGTCAGAGAGTCGACATCGGAACTGATGAGAATTGCCAAGCAGAATGGGATTCCTGTGTTTATTGTAGGTC
ATGTAACAAAAGAAGGGTCCATTGCCGGTCCTCGTTTACTTGAGCATATGGTGGATACAGTCCTTTATTTTGAAGGAGAG
CGGCACCATACGTTTCGTATTGTAAGAAGTGTAAAAAACCGTTTTGGAAGTACTCACGAGATGGGTATTTTTGAAATGAA
GGAGGAAGGTCTTACAGAAGTTCTGAACCCTTCTGAAATTTTTCTGGAAGAACGCTCAAGCGGGGTGGCAGGGTCAACGA
TTGTAGCGTCAATGGAAGGGACAAGACCGGTTCTTGTTGAAATTCAGGCGTTAATTTCACCGACAAGCTTTGGAAATCCG
CGTCGCATGGCAACGGGATTAAGTCAGAATCGTGTTCATCTTTTAATGGCGGTACTGGAAAAAAGAGCAGGTTTGCTGCT
GCAAAACCAGGATGCCTATATTAAAGTAGCCGGTGGTATAAAACTTGATGAACCTGCGATTGATTTAGCCATCGCTGTCA
GTATTGCATCCAGTTTTAGAGAAAAGTCACCCAGACCGGATGATATTCTGATAGGTGAGGTCGGACTGACAGGTGAGGTT
CGCCGTGTATCAAGAATTGAACAGCGTGTTCAGGAAGCGTCCAAATTAGGATTTAAACGGGCGATCGTTCCAAACAATAA
TTTATCCGGATGGGACCCGCCTTCATCCATTGAAGTCGTTGGTGTAGACAGTATTCAGGATGCTTTAAAAGTTACTTTTG
AAACATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B9YHN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.904

100

0.741
  radA Streptococcus mitis NCTC 12261

61.404

100

0.615
  radA Streptococcus mitis SK321

61.404

100

0.615
  radA Streptococcus pneumoniae Rx1

61.184

100

0.613
  radA Streptococcus pneumoniae D39

61.184

100

0.613
  radA Streptococcus pneumoniae R6

61.184

100

0.613
  radA Streptococcus pneumoniae TIGR4

61.184

100

0.613

Multiple sequence alignment