Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   GWK91_RS01445 Genome accession   NZ_CP048021
Coordinates   288446..290296 (+) Length   616 a.a.
NCBI ID   WP_162038742.1    Uniprot ID   A0A6B9YA08
Organism   Virgibacillus sp. MSP4-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 283446..295296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK91_RS01430 (GWK91_01425) mecA 284365..285063 (+) 699 WP_044160810.1 adaptor protein MecA -
  GWK91_RS01435 (GWK91_01430) cls 285537..287045 (+) 1509 WP_044160807.1 cardiolipin synthase -
  GWK91_RS01440 (GWK91_01435) - 287222..288412 (+) 1191 WP_162038741.1 competence protein CoiA -
  GWK91_RS01445 (GWK91_01440) pepF 288446..290296 (+) 1851 WP_162038742.1 oligoendopeptidase F Regulator
  GWK91_RS01450 (GWK91_01445) - 291021..291920 (-) 900 WP_370521785.1 ClpXP adapter SpxH family protein -
  GWK91_RS01455 (GWK91_01450) - 291917..292321 (-) 405 WP_044160796.1 globin -
  GWK91_RS01460 (GWK91_01455) - 292484..293053 (-) 570 WP_044160794.1 CYTH domain-containing protein -
  GWK91_RS01465 (GWK91_01460) - 293223..293855 (+) 633 WP_044160790.1 GTP pyrophosphokinase family protein -
  GWK91_RS01470 (GWK91_01465) - 293884..294687 (+) 804 WP_044160787.1 NAD kinase -

Sequence


Protein


Download         Length: 616 a.a.        Molecular weight: 71765.27 Da        Isoelectric Point: 4.6066

>NTDB_id=419489 GWK91_RS01445 WP_162038742.1 288446..290296(+) (pepF) [Virgibacillus sp. MSP4-1]
MIVVYPFLRRRTLTVANNTKELPKREDIPEERTWKLEDIFESDEAWEKEFKEIQNLYPKMTEFQGRITDSADQLLEMLKL
QDEISNRLGKLFTYAHMRYDQDTTNSFYQELNTRAETLITQASSAMSFIVPELLTLTEDQVKAFISEKEELKTYEHYLED
VLRQRPHILSEKEEELLAEVSEVTSSPEQTFGMLNNADIDFPSVKDADGNEKDLTHGRFIQFMESKDRNVRKNAFDAMYD
TYGKFKNTLASTLSGAVKRDNFNAKARHYDSARQSSLDANNIPESVYDNLVEAVNDRISLLHRYVSLRKQVLDVDELHMY
DLYVPLIDDVDMEVKYDEAKEYVLNGLAPLGEEYQKILEQGFESRWIDVEENKGKRSGAYSSGVYGTNPYILLNWQDNIN
NLFTLAHELGHSLHSYYTHKHQPFRYGNYSIFVAEVASTCNEALLNDYLLKNTNDKREKLYLLNHFLEGFRGTVFRQTMF
AEFEHDIHVRAQNGEALTAEKMTQLYYDLNKKYFGDDLTIDDKIGLEWARIPHFYYNYYVYQYATGYSAATTLASQILNE
GDEAVERYLNYLKAGSSDYPIEVLKRAGVDMTSKDPILSALDVFEEKLNEFEELLK

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=419489 GWK91_RS01445 WP_162038742.1 288446..290296(+) (pepF) [Virgibacillus sp. MSP4-1]
ATGATTGTTGTATACCCATTTTTAAGAAGGAGGACATTGACTGTGGCGAATAACACAAAAGAGTTGCCAAAGAGAGAAGA
CATTCCGGAAGAACGTACCTGGAAACTGGAAGATATATTTGAATCGGACGAGGCCTGGGAAAAAGAATTTAAAGAAATAC
AGAACCTTTATCCGAAAATGACAGAATTTCAAGGCAGAATTACAGACTCTGCTGATCAGTTATTAGAAATGTTAAAGCTT
CAGGATGAAATATCCAATCGATTAGGCAAGCTGTTTACATATGCGCACATGCGCTATGATCAGGACACAACCAACTCCTT
TTATCAGGAATTAAACACCCGCGCTGAAACATTGATCACACAGGCTTCAAGTGCAATGAGTTTTATAGTTCCGGAGCTAT
TAACATTAACCGAGGATCAGGTTAAGGCATTTATATCTGAAAAAGAAGAGTTAAAGACTTACGAGCATTATCTCGAGGAT
GTTCTGCGGCAGCGTCCACATATCCTTAGTGAGAAAGAAGAAGAGCTTCTTGCGGAAGTTTCAGAGGTTACAAGCAGTCC
AGAGCAGACTTTTGGAATGCTGAATAACGCGGATATAGACTTTCCTTCCGTAAAAGATGCAGACGGAAATGAAAAGGACC
TTACGCATGGACGTTTTATTCAGTTTATGGAATCAAAGGATCGTAATGTAAGAAAAAATGCCTTTGATGCTATGTATGAT
ACTTATGGAAAGTTCAAAAATACCCTTGCTTCTACACTTAGCGGGGCGGTAAAACGGGATAATTTTAATGCTAAGGCCCG
TCATTATGATTCAGCAAGACAATCCTCACTGGATGCCAACAATATTCCCGAGAGTGTTTATGATAACCTGGTGGAAGCGG
TAAACGATAGAATATCATTGCTTCATCGCTATGTAAGTCTACGCAAGCAGGTATTGGATGTAGACGAACTGCATATGTAC
GATTTATATGTTCCTCTTATTGATGATGTGGATATGGAGGTAAAATATGACGAAGCCAAGGAATATGTTCTGAATGGATT
GGCTCCATTAGGTGAGGAATATCAGAAAATCCTGGAACAAGGATTTGAAAGCCGCTGGATCGATGTTGAAGAAAACAAAG
GGAAAAGAAGCGGTGCCTACTCTTCAGGCGTTTATGGAACCAACCCGTATATCCTGTTAAATTGGCAGGATAACATTAAC
AATCTCTTTACTCTTGCCCATGAATTAGGGCATTCGCTGCACAGCTACTATACTCATAAGCATCAGCCTTTCCGTTATGG
CAATTATTCCATTTTCGTAGCAGAAGTGGCATCCACCTGTAATGAAGCGTTATTGAATGATTATCTGCTGAAGAATACGA
ATGATAAGAGAGAGAAGCTTTACCTGTTAAATCATTTCTTAGAAGGCTTCCGCGGAACGGTATTCCGTCAGACAATGTTT
GCTGAATTTGAGCATGATATCCATGTTCGTGCTCAGAACGGTGAAGCACTGACTGCTGAAAAAATGACCCAGCTATATTA
TGACCTTAATAAAAAGTATTTTGGTGACGATCTAACGATTGATGACAAAATTGGTCTGGAATGGGCTCGTATTCCTCATT
TCTATTACAATTATTACGTTTATCAATATGCAACAGGCTATTCGGCTGCAACAACACTTGCCTCTCAGATCCTGAATGAG
GGAGATGAAGCTGTGGAAAGATATTTAAACTATCTTAAAGCAGGAAGCAGTGATTATCCAATCGAAGTTCTGAAGCGTGC
CGGAGTAGATATGACGTCCAAGGATCCGATTCTGTCAGCATTAGACGTATTTGAAGAAAAGCTTAATGAGTTTGAAGAGC
TTTTAAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6B9YA08

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

96.104

0.481


Multiple sequence alignment