Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CFU_RS12495 Genome accession   NC_015856
Coordinates   2886555..2887925 (-) Length   456 a.a.
NCBI ID   WP_014006403.1    Uniprot ID   G0AH06
Organism   Collimonas fungivorans Ter331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2881555..2892925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFU_RS12475 (CFU_2419) - 2882498..2883403 (+) 906 WP_014006399.1 LysR family transcriptional regulator -
  CFU_RS12480 (CFU_2420) - 2883779..2884477 (+) 699 WP_041741915.1 TerC family protein -
  CFU_RS12485 (CFU_2421) fghA 2884533..2885381 (-) 849 WP_041741917.1 S-formylglutathione hydrolase -
  CFU_RS12490 (CFU_2422) - 2885381..2886487 (-) 1107 WP_014006402.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  CFU_RS12495 (CFU_2423) radA 2886555..2887925 (-) 1371 WP_014006403.1 DNA repair protein RadA Machinery gene
  CFU_RS12500 (CFU_2424) alr 2888144..2889220 (-) 1077 WP_014006404.1 alanine racemase -
  CFU_RS12505 (CFU_2425) lplT 2889431..2890693 (+) 1263 WP_041741919.1 lysophospholipid transporter LplT -
  CFU_RS12510 (CFU_2426) - 2890782..2891600 (-) 819 WP_014006406.1 hypothetical protein -
  CFU_RS12515 (CFU_2427) - 2891736..2892716 (-) 981 WP_014006407.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48618.19 Da        Isoelectric Point: 7.4346

>NTDB_id=41945 CFU_RS12495 WP_014006403.1 2886555..2887925(-) (radA) [Collimonas fungivorans Ter331]
MAKAKTNYTCTECGGVANKWTGQCPSCGQWNTLVETLVEAVGNRFSNQHQGLAQTAPVMTLADIEAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKLKKVLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNT
LVEHKPEVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKANMPKQEIEGLKVIGVERIDDALSKIRDAE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=41945 CFU_RS12495 WP_014006403.1 2886555..2887925(-) (radA) [Collimonas fungivorans Ter331]
ATGGCCAAAGCTAAAACCAATTACACCTGCACCGAATGCGGCGGCGTCGCCAATAAATGGACCGGCCAGTGCCCGTCGTG
CGGGCAATGGAACACGCTGGTGGAAACCCTCGTGGAGGCGGTCGGCAACCGTTTTTCAAACCAGCACCAGGGCCTGGCGC
AGACCGCGCCGGTGATGACCCTGGCCGACATCGAAGCCATCGACGTGCCGCGCTTCGGCACCGGCATCGAGGAATTCGAC
CGGGTGCTGGGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCTTGCT
GCTGCAGGCGCTGGCGAACTTGTCGAAGCTGAAAAAAGTGCTGTATGTCAGCGGCGAAGAATCCGGCGCCCAAATCGCCC
TGCGCGCCAAGCGGCTGGCGGTGGACGCCAAGGATCTCAAGCTGCAGGCTGAAATCCAGCTGGAAAAGATCCTCAACACC
CTGGTCGAGCATAAACCCGAAGTGGCGGTCATCGACTCGATCCAGACCGTCTATTCGGATGCGCTCAGTTCCGCGCCCGG
TTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGGTCGCCAAGCAATCCGGCATCACCATCATCATGGTCG
GCCACGTCACCAAGGAAGGCGCGCTGGCAGGGCCGCGCGTGCTGGAGCACATCGTCGATACGGTCTTGTATTTCGAAGGC
GATACCCATTCCAGCTTCCGCCTGGTGCGCGCATTCAAGAACCGCTTTGGTGCGGTCAACGAGCTCGGCGTATTCGCCAT
GACGGAAAAGGGATTGAAGGGCGTCTCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCGGCTCCT
GCGTGATGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTTGAGATCCAGGCCCTGGTCGACGCTTCGCATGTGCCGAAC
GCGCGCCGGCTGTCGGTCGGGCTGGAGCAGAACCGCCTGGCAATGCTGCTGGCGGTGCTGCATCGCCATGCCGGCATTGC
CGCCTTCGACCAGGATGTGTTCATCAACGCGGTCGGCGGCGTCAAGATCACCGAACCGGCGGCCGACCTGGCGGTGCTGC
TGGCGATCAATTCGTCCATGCGCAACCGGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAGGTTGGCCTGGCGGGCGAG
ATCCGGCCGGCGCCGCGCGGCCAGGAACGTTTGCGCGAAGCCGCCAAGCTGGGATTCTCGATTGCCATGATTCCCAAGGC
GAACATGCCGAAGCAAGAGATCGAAGGTTTGAAAGTGATCGGCGTCGAACGCATCGATGACGCTTTGAGCAAGATACGCG
ACGCCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0AH06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

99.781

0.493
  radA Streptococcus mitis NCTC 12261

48.246

100

0.482
  radA Streptococcus mitis SK321

48.246

100

0.482
  radA Streptococcus pneumoniae Rx1

47.921

100

0.48
  radA Streptococcus pneumoniae D39

47.921

100

0.48
  radA Streptococcus pneumoniae R6

47.921

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.921

100

0.48

Multiple sequence alignment