Detailed information
Bioinformatically predicted
Overview
| Name | recU | Type | Machinery gene |
| Locus tag | IBB94_RS01325 | Genome accession | NZ_CP061024 |
| Coordinates | 244050..244646 (-) | Length | 198 a.a. |
| NCBI ID | WP_002949408.1 | Uniprot ID | Q5M648 |
| Organism | Streptococcus thermophilus strain 13498 | ||
| Function | plasmid transformation; homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 239050..249646
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBB94_RS01315 (IBB94_01315) | - | 240376..241632 (+) | 1257 | WP_011681055.1 | ISL3-like element ISSth1 family transposase | - |
| IBB94_RS01320 (IBB94_01320) | pbp1a | 241708..244050 (-) | 2343 | WP_207560149.1 | penicillin-binding protein PBP1A | - |
| IBB94_RS01325 (IBB94_01325) | recU | 244050..244646 (-) | 597 | WP_002949408.1 | Holliday junction resolvase RecU | Machinery gene |
| IBB94_RS01330 (IBB94_01330) | - | 244723..245238 (+) | 516 | WP_116920094.1 | DUF1273 domain-containing protein | - |
| IBB94_RS01335 (IBB94_01335) | gpsB | 245347..245679 (+) | 333 | WP_084830490.1 | cell division regulator GpsB | - |
| IBB94_RS01345 (IBB94_01345) | - | 246212..247378 (+) | 1167 | WP_014607933.1 | class I SAM-dependent RNA methyltransferase | - |
| IBB94_RS01350 (IBB94_01350) | - | 247381..249243 (+) | 1863 | WP_014607934.1 | cell division site-positioning protein MapZ family protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 22827.38 Da Isoelectric Point: 10.1106
>NTDB_id=419442 IBB94_RS01325 WP_002949408.1 244050..244646(-) (recU) [Streptococcus thermophilus strain 13498]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT
Nucleotide
Download Length: 597 bp
>NTDB_id=419442 IBB94_RS01325 WP_002949408.1 244050..244646(-) (recU) [Streptococcus thermophilus strain 13498]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAGGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAGGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recU | Bacillus subtilis subsp. subtilis str. 168 |
49.754 |
100 |
0.51 |