Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GVU25_RS05540 Genome accession   NZ_CP048014
Coordinates   1151983..1152363 (+) Length   126 a.a.
NCBI ID   WP_004976793.1    Uniprot ID   A0A2A5PJN4
Organism   Acinetobacter towneri strain 205     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1146983..1157363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS05510 (GVU25_05505) kdsB 1147812..1148573 (+) 762 WP_004976805.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GVU25_RS05515 (GVU25_05510) - 1148588..1149577 (+) 990 WP_154320798.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  GVU25_RS05520 (GVU25_05515) - 1149588..1149929 (+) 342 WP_026438361.1 PilZ domain-containing protein -
  GVU25_RS05525 (GVU25_05520) - 1149954..1150727 (+) 774 WP_004976800.1 TatD family hydrolase -
  GVU25_RS05530 (GVU25_05525) - 1150821..1151435 (+) 615 WP_096901168.1 TetR/AcrR family transcriptional regulator -
  GVU25_RS05535 (GVU25_05530) - 1151442..1151993 (+) 552 WP_167845963.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GVU25_RS05540 (GVU25_05535) xcpV 1151983..1152363 (+) 381 WP_004976793.1 type II secretion system minor pseudopilin GspI Machinery gene
  GVU25_RS05545 (GVU25_05540) xcpW 1152360..1152983 (+) 624 WP_167845964.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GVU25_RS05550 (GVU25_05545) gspK 1152997..1153980 (+) 984 WP_171525021.1 type II secretion system minor pseudopilin GspK -
  GVU25_RS05555 (GVU25_05550) - 1154163..1154759 (+) 597 WP_104851897.1 6-pyruvoyl trahydropterin synthase family protein -
  GVU25_RS05560 (GVU25_05555) ung 1154797..1155510 (+) 714 WP_004976786.1 uracil-DNA glycosylase -
  GVU25_RS05565 (GVU25_05560) - 1155507..1156628 (+) 1122 WP_004976784.1 enoyl-CoA hydratase/isomerase family protein -
  GVU25_RS05570 (GVU25_05565) tadA 1156656..1157147 (+) 492 WP_004976782.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13964.99 Da        Isoelectric Point: 6.2920

>NTDB_id=419436 GVU25_RS05540 WP_004976793.1 1151983..1152363(+) (xcpV) [Acinetobacter towneri strain 205]
MKAKGFTLLEVMVALAIFATAAMAMTKVAMQYTQSTANAILRTKAQFVALNEVALMEMNRQWLSGTESKQVTQQGETWQI
DKSTQPTISPNVQRVDLQISLYNQDTGQVEAGVTSLVFFNAREQQS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=419436 GVU25_RS05540 WP_004976793.1 1151983..1152363(+) (xcpV) [Acinetobacter towneri strain 205]
ATGAAAGCTAAAGGATTTACACTACTTGAAGTTATGGTGGCTTTGGCAATTTTTGCAACAGCAGCTATGGCAATGACCAA
AGTGGCGATGCAATATACCCAATCCACCGCCAATGCAATTTTAAGAACCAAAGCACAATTTGTGGCTTTGAATGAAGTGG
CATTGATGGAAATGAATCGGCAATGGTTAAGTGGAACAGAGTCAAAGCAAGTGACACAACAGGGCGAAACATGGCAAATT
GACAAGTCCACACAGCCAACCATTAGTCCGAATGTGCAACGTGTCGATCTTCAAATCAGTTTATATAATCAAGACACAGG
ACAAGTTGAAGCAGGAGTGACTTCTTTGGTGTTTTTTAATGCCCGTGAGCAGCAATCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PJN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

77.5

95.238

0.738

Multiple sequence alignment