Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GVU25_RS02190 Genome accession   NZ_CP048014
Coordinates   480096..480953 (+) Length   285 a.a.
NCBI ID   WP_167846441.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 475096..485953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS02165 (GVU25_02160) - 475616..476773 (+) 1158 WP_154320786.1 RNA-guided endonuclease InsQ/TnpB family protein -
  GVU25_RS02170 (GVU25_02165) - 476919..477299 (-) 381 WP_371972010.1 hypothetical protein -
  GVU25_RS02175 (GVU25_02170) - 477583..478158 (-) 576 WP_004976172.1 xanthine phosphoribosyltransferase -
  GVU25_RS02180 (GVU25_02175) - 478287..479000 (-) 714 WP_004976176.1 DUF3108 domain-containing protein -
  GVU25_RS02185 (GVU25_02180) - 479146..479820 (-) 675 WP_004976182.1 hypothetical protein -
  GVU25_RS02190 (GVU25_02185) tonB2 480096..480953 (+) 858 WP_167846441.1 energy transducer TonB Machinery gene
  GVU25_RS02195 (GVU25_02190) ybeY 481166..481648 (-) 483 WP_004976192.1 rRNA maturation RNase YbeY -
  GVU25_RS02200 (GVU25_02195) - 481692..482765 (-) 1074 WP_004976193.1 PhoH family protein -
  GVU25_RS02205 (GVU25_02200) miaB 482805..484259 (-) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32225.57 Da        Isoelectric Point: 6.7494

>NTDB_id=419431 GVU25_RS02190 WP_167846441.1 480096..480953(+) (tonB2) [Acinetobacter towneri strain 205]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMSTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKKDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKTSVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=419431 GVU25_RS02190 WP_167846441.1 480096..480953(+) (tonB2) [Acinetobacter towneri strain 205]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGCTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGAGCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGAAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAACTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.685

97.895

0.702

Multiple sequence alignment