Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   GVU25_RS01120 Genome accession   NZ_CP048014
Coordinates   251951..252277 (+) Length   108 a.a.
NCBI ID   WP_004975751.1    Uniprot ID   A0A2A5PGU4
Organism   Acinetobacter towneri strain 205     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 246951..257277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS01095 (GVU25_01095) hemC 247616..248536 (+) 921 WP_096901970.1 hydroxymethylbilane synthase -
  GVU25_RS01100 (GVU25_01100) - 248558..249337 (+) 780 WP_004975746.1 uroporphyrinogen-III synthase -
  GVU25_RS01105 (GVU25_01105) - 249334..250170 (+) 837 WP_167845709.1 hypothetical protein -
  GVU25_RS01110 (GVU25_01110) - 250171..251364 (+) 1194 WP_167845710.1 heme biosynthesis protein HemY -
  GVU25_RS01115 (GVU25_01115) - 251374..251805 (+) 432 WP_004975749.1 acyl-CoA thioesterase -
  GVU25_RS01120 (GVU25_01120) hns 251951..252277 (+) 327 WP_004975751.1 H-NS family nucleoid-associated regulatory protein Regulator
  GVU25_RS01125 (GVU25_01125) gspN 252440..253180 (+) 741 WP_096901906.1 type II secretion system protein N -
  GVU25_RS01130 (GVU25_01130) - 253180..254019 (+) 840 WP_167845711.1 type II secretion system protein N -
  GVU25_RS01135 (GVU25_01135) gspD 254080..256335 (+) 2256 WP_104852930.1 type II secretion system secretin GspD -
  GVU25_RS01140 (GVU25_01140) - 256405..257055 (+) 651 WP_167845712.1 FHA domain-containing protein -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12180.06 Da        Isoelectric Point: 9.8659

>NTDB_id=419427 GVU25_RS01120 WP_004975751.1 251951..252277(+) (hns) [Acinetobacter towneri strain 205]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKINST
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=419427 GVU25_RS01120 WP_004975751.1 251951..252277(+) (hns) [Acinetobacter towneri strain 205]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCAATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTTCT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2A5PGU4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.926

100

0.759


Multiple sequence alignment