Detailed information NTG0419384

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: GWC79_RS09540
• Genome accession: NZ_CP048008
• Coordinates: 1932926..1933900 (+)
• Length: 324 a.a.
• NCBI ID: WP_002478129.1
• Uniprot ID: -
• Organism: Staphylococcus lugdunensis strain CGMH-SL118
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1927926..1938900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWC79_RS09505	rpmG	1928349..1928498 (+)	150	WP_001830957.1	50S ribosomal protein L33	-
GWC79_RS09510	-	1928748..1929285 (+)	538	Protein_1831	5-formyltetrahydrofolate cyclo-ligase	-
GWC79_RS09515	-	1929302..1930759 (+)	1458	WP_228865257.1	rhomboid family protein	-
GWC79_RS09520	-	1930743..1930946 (+)	204	WP_002459010.1	YqgQ family protein	-
GWC79_RS09525	-	1930943..1931929 (+)	987	WP_002478128.1	ROK family glucokinase	-
GWC79_RS09530	-	1931929..1932252 (+)	324	WP_002459012.1	MTH1187 family thiamine-binding protein	-
GWC79_RS09535	-	1932256..1932879 (+)	624	WP_002459013.1	MBL fold metallo-hydrolase	-
GWC79_RS09540	comGA	1932926..1933900 (+)	975	WP_002478129.1	competence type IV pilus ATPase ComGA	Machinery gene
GWC79_RS09545	comGB	1933872..1934936 (+)	1065	WP_002478130.1	competence type IV pilus assembly protein ComGB	-
GWC79_RS09550	comGC	1934951..1935265 (+)	315	WP_002459016.1	competence type IV pilus major pilin ComGC	Machinery gene
GWC79_RS09555	comGD	1935198..1935692 (+)	495	WP_225306455.1	competence type IV pilus minor pilin ComGD	-
GWC79_RS09560	-	1935679..1935972 (+)	294	WP_002478131.1	hypothetical protein	-
GWC79_RS13795	-	1936034..1936393 (+)	360	WP_002478132.1	competence type IV pilus minor pilin ComGF	-
GWC79_RS09570	-	1936547..1937065 (+)	519	WP_002459021.1	shikimate kinase	-
GWC79_RS09575	gcvT	1937235..1938326 (+)	1092	WP_002478133.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 36932.76 Da
• Isoelectric Point: 7.8896

>NTDB_id=419384 GWC79_RS09540 WP_002478129.1 1932926..1933900(+) (comGA) [Staphylococcus lugdunensis strain CGMH-SL118]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT

Nucleotide

• Length: 975 bp

>NTDB_id=419384 GWC79_RS09540 WP_002478129.1 1932926..1933900(+) (comGA) [Staphylococcus lugdunensis strain CGMH-SL118]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	71.207	99.691	0.71
comGA	Staphylococcus aureus N315	71.207	99.691	0.71