Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   I02_RS02745 Genome accession   NC_017651
Coordinates   569868..570473 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli str. 'clone D i2'     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 564868..575473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I02_RS28785 - 565422..565520 (+) 99 Protein_524 hypothetical protein -
  I02_RS02715 (i02_0561) rsmS 565573..565734 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  I02_RS02720 (i02_0562) priC 565748..566275 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  I02_RS02725 (i02_0563) ybaN 566345..566722 (+) 378 WP_001188900.1 DUF454 family protein -
  I02_RS02730 (i02_0564) apt 566875..567426 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  I02_RS02735 (i02_0565) dnaX 567555..569486 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  I02_RS02740 (i02_0566) ybaB 569539..569868 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  I02_RS02745 (i02_0567) recR 569868..570473 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  I02_RS02750 (i02_0568) htpG 570583..572457 (+) 1875 WP_000678210.1 molecular chaperone HtpG -
  I02_RS02755 (i02_0569) adk 572638..573282 (+) 645 WP_001313630.1 adenylate kinase -
  I02_RS02760 (i02_0570) hemH 573414..574376 (+) 963 WP_001250114.1 ferrochelatase -
  I02_RS02765 (i02_0571) aes 574373..575332 (-) 960 WP_000801819.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41937 I02_RS02745 WP_001195025.1 569868..570473(+) (recR) [Escherichia coli str. 'clone D i2']
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41937 I02_RS02745 WP_001195025.1 569868..570473(+) (recR) [Escherichia coli str. 'clone D i2']
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443