Detailed information NTG0041936

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: CFU_RS02990
• Genome accession: NC_015856
• Coordinates: 682545..683669 (-)
• Length: 374 a.a.
• NCBI ID: WP_014004573.1
• Uniprot ID: G0A8A6
• Organism: Collimonas fungivorans Ter331
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 677545..688669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFU_RS02960 (CFU_0576)	-	677944..678288 (-)	345	WP_014004567.1	DUF1840 domain-containing protein	-
CFU_RS02965 (CFU_0577)	-	678414..678956 (-)	543	WP_238531393.1	hypothetical protein	-
CFU_RS02970 (CFU_0578)	-	678994..679953 (-)	960	WP_014004569.1	DMT family transporter	-
CFU_RS02975 (CFU_0579)	-	680044..680880 (-)	837	WP_041741148.1	AraC family transcriptional regulator	-
CFU_RS02980 (CFU_0580)	ftsX	680900..681826 (-)	927	WP_014004571.1	permease-like cell division protein FtsX	-
CFU_RS02985 (CFU_0581)	-	681823..682506 (-)	684	WP_041741149.1	ATP-binding cassette domain-containing protein	-
CFU_RS02990 (CFU_0582)	pilA	682545..683669 (-)	1125	WP_014004573.1	signal recognition particle-docking protein FtsY	Machinery gene
CFU_RS02995 (CFU_0584)	rsmD	684013..684666 (+)	654	WP_041741150.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
CFU_RS03000 (CFU_0585)	coaD	684710..685198 (+)	489	WP_038485166.1	pantetheine-phosphate adenylyltransferase	-
CFU_RS03005 (CFU_0586)	-	685289..685564 (+)	276	WP_014004577.1	YfhL family 4Fe-4S dicluster ferredoxin	-
CFU_RS03010 (CFU_0587)	-	685580..686431 (-)	852	WP_041741151.1	MOSC N-terminal beta barrel domain-containing protein	-
CFU_RS03015 (CFU_0588)	gcvA	686438..687334 (-)	897	WP_014004579.1	transcriptional regulator GcvA	-

Sequence

Protein

• Length: 374 a.a.
• Molecular weight: 39484.65 Da
• Isoelectric Point: 5.6789

>NTDB_id=41936 CFU_RS02990 WP_014004573.1 682545..683669(-) (pilA) [Collimonas fungivorans Ter331]
MFSFFKKKPKPEVIPQPKPSAPAELAQIEAVEAIPVVAPSAPAPAEAGVTSDPVVAPEVEPAAETEIVAAPVAAEQKRSW
LSRLKTGLSKTSSNLSILFVGAKIDDDLYEELESALLVSDAGVDATHFLLNALKKKVKDDKLTEAVQVKAALRSLLIDLL
TPLQKPLVLDQHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNVTVISQESGDP
AAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVIDGNTGQNALAQVKAFDDALGL
TGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFDAAEFVDALLN

Nucleotide

• Length: 1125 bp

>NTDB_id=41936 CFU_RS02990 WP_014004573.1 682545..683669(-) (pilA) [Collimonas fungivorans Ter331]
ATGTTTAGCTTCTTCAAGAAAAAACCAAAACCCGAAGTAATACCCCAGCCGAAACCTTCTGCGCCAGCCGAATTGGCGCA
GATTGAAGCCGTAGAAGCCATTCCAGTTGTTGCGCCAAGCGCGCCGGCGCCGGCTGAGGCGGGCGTGACGTCAGATCCTG
TGGTCGCGCCGGAAGTGGAGCCTGCAGCGGAAACCGAAATCGTTGCAGCGCCGGTCGCGGCGGAACAAAAACGCTCCTGG
CTGTCGCGCCTGAAAACCGGGCTGTCGAAAACTTCCTCCAACCTGAGCATCCTGTTTGTCGGCGCCAAGATCGACGACGA
CCTGTACGAAGAACTGGAATCGGCGCTGCTGGTGTCCGACGCCGGCGTCGACGCCACGCATTTCCTGCTCAACGCCCTGA
AAAAGAAGGTCAAGGACGACAAGCTGACCGAGGCGGTCCAGGTCAAGGCGGCGCTGCGCAGCCTGCTGATCGATTTGCTC
ACTCCTTTGCAGAAACCGCTGGTGCTGGACCAGCACCAGCCGCTGGTGATCATGATCGCCGGCGTCAACGGCGCCGGCAA
GACCACCACCATCGGCAAGCTGGCCAAACATCTGCAAGCGCATAAACAATCGGTGCTGCTGGCCGCCGGCGACACCTTCC
GCGCCGCGGCGCGCGAGCAGCTGACGATCTGGGGCGAGCGCAACAACGTCACCGTGATCTCGCAGGAATCCGGCGATCCG
GCCGCTGTCGCGTTCGACGCCGTGCATTCGGCGCAGGCGCGCGGCACCAACGTGGTAATGGTCGACACCGCCGGCCGCCT
GCCGACCCAGCTGCACTTGATGGACGAGCTGAAGAAGATCAAACGCGTGATCGGCAAAGGCATGGCCACCGCGCCGCACG
AGATATTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCGCAAGTCAAGGCGTTCGACGATGCGCTGGGCCTG
ACCGGCCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCGGCCATCGCCACCACCCGCGCGATCCC
GGTGTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTGACGCGGCTGAATTTGTGGATGCATTGCTGA
ATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (175-373)

• SRP54-type protein, helical bundle domain (SRP54_N) (100-154)

3D structure

• AlphaFold DB: G0A8A6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.196	100	0.572