Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GWC80_RS12375 Genome accession   NZ_CP048007
Coordinates   2592251..2592760 (-) Length   169 a.a.
NCBI ID   WP_002461102.1    Uniprot ID   A0A133Q7N8
Organism   Staphylococcus lugdunensis strain CGMH-SL131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2581497..2594181 2592251..2592760 within 0


Gene organization within MGE regions


Location: 2581497..2594181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC80_RS12290 - 2581497..2582069 (-) 573 WP_002445377.1 terminase small subunit -
  GWC80_RS12295 - 2582132..2582653 (-) 522 WP_002445376.1 hypothetical protein -
  GWC80_RS12300 - 2582665..2582898 (-) 234 WP_002492317.1 hypothetical protein -
  GWC80_RS12305 - 2582912..2583255 (-) 344 Protein_2380 pathogenicity island protein -
  GWC80_RS12310 - 2583541..2584182 (-) 642 WP_002492071.1 pathogenicity island protein -
  GWC80_RS12315 - 2584184..2584705 (-) 522 WP_002492062.1 hypothetical protein -
  GWC80_RS12320 - 2585030..2586739 (-) 1710 WP_002492057.1 DUF927 domain-containing protein -
  GWC80_RS12325 - 2586753..2587622 (-) 870 WP_002492075.1 primase alpha helix C-terminal domain-containing protein -
  GWC80_RS12330 - 2587716..2588018 (-) 303 WP_002492064.1 DUF1474 family protein -
  GWC80_RS12335 - 2588018..2588437 (-) 420 WP_002492019.1 hypothetical protein -
  GWC80_RS12340 - 2588427..2588585 (-) 159 WP_002492040.1 hypothetical protein -
  GWC80_RS12345 - 2588602..2588874 (-) 273 WP_002492070.1 helix-turn-helix domain-containing protein -
  GWC80_RS12350 - 2588875..2589096 (-) 222 WP_002492076.1 helix-turn-helix transcriptional regulator -
  GWC80_RS12355 - 2589268..2589840 (+) 573 WP_002459648.1 helix-turn-helix transcriptional regulator -
  GWC80_RS12360 - 2589867..2590559 (+) 693 WP_002459649.1 hypothetical protein -
  GWC80_RS12365 - 2590596..2591816 (+) 1221 WP_002492008.1 site-specific integrase -
  GWC80_RS12370 rpsR 2591962..2592204 (-) 243 WP_002461103.1 30S ribosomal protein S18 -
  GWC80_RS12375 ssbA 2592251..2592760 (-) 510 WP_002461102.1 single-stranded DNA-binding protein Machinery gene
  GWC80_RS12380 rpsF 2592782..2593078 (-) 297 WP_002461101.1 30S ribosomal protein S6 -
  GWC80_RS12385 - 2593396..2594181 (+) 786 WP_002461100.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18747.34 Da        Isoelectric Point: 4.9366

>NTDB_id=419359 GWC80_RS12375 WP_002461102.1 2592251..2592760(-) (ssbA) [Staphylococcus lugdunensis strain CGMH-SL131]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=419359 GWC80_RS12375 WP_002461102.1 2592251..2592760(-) (ssbA) [Staphylococcus lugdunensis strain CGMH-SL131]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAGAA
CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT
GATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133Q7N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.896

100

0.675
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.722

0.373
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment