Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   GWC80_RS00380 Genome accession   NZ_CP048007
Coordinates   85567..87192 (-) Length   541 a.a.
NCBI ID   WP_058649872.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain CGMH-SL131     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80567..92192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWC80_RS00355 - 81615..83402 (-) 1788 WP_058649867.1 class I SAM-dependent DNA methyltransferase -
  GWC80_RS00360 - 83545..83766 (-) 222 WP_058649868.1 hypothetical protein -
  GWC80_RS00365 - 83780..84283 (-) 504 WP_058649869.1 DUF1643 domain-containing protein -
  GWC80_RS00370 - 84298..84609 (-) 312 WP_058649870.1 DUF960 family protein -
  GWC80_RS00375 - 84696..85046 (-) 351 WP_058649871.1 SAUGI family uracil-DNA glycosylase inhibitor -
  GWC80_RS00380 ccrB 85567..87192 (-) 1626 WP_058649872.1 recombinase family protein Machinery gene
  GWC80_RS00385 ccrA 87189..88550 (-) 1362 WP_058649873.1 recombinase family protein Machinery gene
  GWC80_RS00390 - 88764..88940 (-) 177 WP_172412331.1 hypothetical protein -
  GWC80_RS00395 - 88946..89248 (-) 303 WP_070474359.1 hypothetical protein -
  GWC80_RS00400 - 89401..90594 (+) 1194 WP_058649875.1 FAD/NAD(P)-binding oxidoreductase -
  GWC80_RS00405 - 90679..91374 (-) 696 WP_058649876.1 CocE/NonD family hydrolase C-terminal non-catalytic domain-containing protein -
  GWC80_RS00410 - 91371..91529 (-) 159 WP_249689289.1 hypothetical protein -
  GWC80_RS00415 - 91680..92123 (+) 444 WP_172412322.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62319.54 Da        Isoelectric Point: 9.7539

>NTDB_id=419327 GWC80_RS00380 WP_058649872.1 85567..87192(-) (ccrB) [Staphylococcus lugdunensis strain CGMH-SL131]
MTQLKKKRIGLYARVSTEMQTDGYSIQGQLNQLKDYCQFQGYEVVNEYTDRGISGKTTQRPELQRMLKDANDGKLDCIMV
YKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFSEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDKALWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSIRADVLEKYVMDQILEIIKSKKVLKQLVEKINENSQIDVSSLNHDIAYKQSQCEE
IKAKMHTLTKTIEDSPDLNSVLKPTILSYQDELNQINNQIHQLERDKQAEAPHYDADMIANVLQAIFKDINKLEKSQLKS
LYLTVIDRIDIRKHEHHKKQFYVTLKLNNDIIKQLFDNHPLDEVLLSTSSLFFPQTLYLTI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=419327 GWC80_RS00380 WP_058649872.1 85567..87192(-) (ccrB) [Staphylococcus lugdunensis strain CGMH-SL131]
ATGACACAACTCAAAAAGAAACGTATTGGATTATATGCCCGTGTATCAACTGAAATGCAAACCGATGGTTACAGTATTCA
AGGTCAATTGAACCAACTCAAAGATTATTGTCAATTTCAAGGCTATGAAGTTGTTAATGAATATACCGATCGTGGTATAT
CTGGTAAAACAACCCAACGCCCTGAACTGCAACGTATGTTAAAAGATGCAAACGACGGTAAGTTAGACTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGACTTACTAAATATTGTCGAAGAATTGTATAAGATTAATGTCGAATT
TTTTAGTCTCACTGAAAAAATAGAAATTGCCAGCTCAACAGGTAAATTGATGCTCCAAATTCTTGCTAGTTTCTCTGAGT
TTGAAAGAAATACAATCGTAGAAAACGTTTATAACGGTCAAAGACAACGTGCCATTGAAGGTTATTACCAAGGTAATTTA
CCTCTAGGCTATGATAAAGTGCCTGATAGTAAAAAAGAGCTCATGATCAATCAACATGAAGCGAATATTGTTAAATATAT
TTTTGAGTCATACGCCAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTAAATCATAAAGGTTATGTGACTAAGAAAG
GGAAACCTTTTAGTATTTCATCCATTACCTACATCATCTCAAACCCTTTTTATATTGGAAAGATACAATTTGCGAAGTAT
AGACACTGGAGCGATAAAAGACGAAAAGGACTCAATGAAGAACCGATTATTGCAGATGGTAAGCATGCACCTATTATTGA
TAAAGCTTTATGGGATAAAGTACAGTTTAAACGCCAAGAGAGTCGCAAGAAACCACAAGTTCACGGTAAAGGGACCAACC
TACTGACTGGCATTGTAAAATGTCCAAAATGTGGTGCAGCAATGGCCGCAAGTAATACAACCAATACTTTAAAAGATGGC
ACTAAGAAACGAATCAGATATTACTCATGTAGTAATTTTCGTAATAAAGGTTCTAAAGTATGTTCGGCCAATAGCATTAG
AGCAGATGTATTGGAAAAATACGTTATGGATCAAATATTGGAGATTATCAAAAGTAAAAAAGTATTGAAGCAATTGGTTG
AAAAGATAAATGAAAACAGTCAAATAGACGTCTCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGTGAAGAA
ATAAAAGCCAAAATGCATACACTAACGAAAACCATTGAAGACTCACCTGACTTAAATAGCGTATTGAAACCAACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATACATCAACTAGAACGAGATAAACAAGCGGAAGCTCCACATT
ATGATGCTGATATGATTGCCAACGTACTACAAGCTATATTCAAAGACATTAATAAATTAGAGAAATCGCAGTTGAAATCA
CTCTATCTGACGGTTATCGATCGTATTGATATCCGAAAACATGAACATCATAAGAAGCAATTTTATGTTACGCTCAAATT
GAATAACGATATTATTAAACAACTATTTGATAATCATCCACTCGACGAAGTGCTCCTTAGCACTTCGTCTTTATTTTTTC
CCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Recombinase (Recombinase)

(179-280)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

72.325

100

0.725

Multiple sequence alignment