Detailed information NTG0419230

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: GWK37_RS07335
• Genome accession: NZ_CP048002
• Coordinates: 1455297..1456442 (+)
• Length: 381 a.a.
• NCBI ID: WP_079891436.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain CACC 316
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1450297..1461442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWK37_RS07315 (GWK37_07320)	fnr	1450771..1451487 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
GWK37_RS07320 (GWK37_07325)	narK	1451585..1452775 (-)	1191	WP_161511997.1	nitrate transporter NarK	-
GWK37_RS07325 (GWK37_07330)	argS	1452910..1454580 (-)	1671	WP_017418711.1	arginine--tRNA ligase	-
GWK37_RS07330 (GWK37_07335)	-	1454577..1455005 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
GWK37_RS07335 (GWK37_07340)	rapF	1455297..1456442 (+)	1146	WP_079891436.1	Rap family tetratricopeptide repeat protein	Regulator
GWK37_RS07340 (GWK37_07345)	-	1456426..1456545 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
GWK37_RS07345 (GWK37_07350)	speB	1456668..1457105 (-)	438	Protein_1452	agmatinase	-
GWK37_RS07350 (GWK37_07355)	-	1457267..1458691 (-)	1425	WP_115941145.1	DUF885 family protein	-
GWK37_RS07355 (GWK37_07360)	-	1458692..1460032 (-)	1341	WP_115941146.1	MATE family efflux transporter	-
GWK37_RS07360 (GWK37_07365)	-	1460029..1461084 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=419230 GWK37_RS07335 WP_079891436.1 1455297..1456442(+) (rapF) [Bacillus velezensis strain CACC 316]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=419230 GWK37_RS07335 WP_079891436.1 1455297..1456442(+) (rapF) [Bacillus velezensis strain CACC 316]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533