Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATC_RS03145 Genome accession   NC_015850
Coordinates   631956..632411 (+) Length   151 a.a.
NCBI ID   WP_004870790.1    Uniprot ID   -
Organism   Acidithiobacillus caldus SM-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 626956..637411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATC_RS03130 (Atc_0632) - 627476..628495 (+) 1020 WP_004870784.1 DNA-directed RNA polymerase subunit alpha -
  ATC_RS03135 (Atc_0633) rplQ 628537..628923 (+) 387 WP_004870787.1 50S ribosomal protein L17 -
  ATC_RS03140 (Atc_0634) uvrA 629057..631873 (-) 2817 WP_004870788.1 excinuclease ABC subunit UvrA -
  ATC_RS03145 (Atc_0635) ssb 631956..632411 (+) 456 WP_004870790.1 single-stranded DNA-binding protein Machinery gene
  ATC_RS03150 (Atc_0636) - 632422..632655 (-) 234 WP_004870811.1 phage integrase N-terminal SAM-like domain-containing protein -
  ATC_RS03155 (Atc_0637) - 632821..633213 (+) 393 WP_004870812.1 carboxymuconolactone decarboxylase family protein -
  ATC_RS03160 (Atc_0638) pmbA 633467..634810 (-) 1344 WP_004870813.1 metalloprotease PmbA -
  ATC_RS03165 (Atc_0639) - 634882..636105 (-) 1224 WP_004870814.1 tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16697.45 Da        Isoelectric Point: 5.3376

>NTDB_id=41920 ATC_RS03145 WP_004870790.1 631956..632411(+) (ssb) [Acidithiobacillus caldus SM-1]
MAGVNRVILLGHLGRDPEMRYQPSGGAIATLNLATSETYKDREGNRQERTEWHRVVFFGRPAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEVVGDRLQLVGGRGGGGANLDEDGPRSSAGAGSGRSNREMPPVPQEDFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=41920 ATC_RS03145 WP_004870790.1 631956..632411(+) (ssb) [Acidithiobacillus caldus SM-1]
ATGGCGGGAGTGAATCGGGTCATCTTGTTGGGGCACCTGGGCCGTGATCCGGAGATGCGCTATCAGCCCAGTGGTGGCGC
CATTGCCACCCTGAATTTGGCGACATCCGAGACCTATAAGGATCGCGAGGGCAATCGACAAGAGCGCACCGAGTGGCATC
GCGTGGTGTTCTTTGGTCGGCCGGCGGAGATTGCCGGCGAGTATCTGCGCAAAGGAAGCATGGCCTATGTCGAGGGGCGC
TTGCAGACCCGCAAGTGGACGGACAAGGAGGGCCAGGAGCGCTACACCACCGAGGTGGTGGGCGACCGCCTGCAATTGGT
CGGCGGGCGTGGCGGCGGCGGGGCCAACCTGGACGAGGATGGCCCCCGTAGCAGCGCCGGTGCCGGTTCTGGCCGTAGCA
ATCGCGAGATGCCGCCTGTTCCGCAGGAAGACTTTGACGACGACATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Vibrio cholerae strain A1552

47.977

100

0.55
  ssb Neisseria gonorrhoeae MS11

42.442

100

0.483
  ssb Neisseria meningitidis MC58

41.86

100

0.477

Multiple sequence alignment