Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GWK37_RS00225 Genome accession   NZ_CP048002
Coordinates   31321..31929 (+) Length   202 a.a.
NCBI ID   WP_115940742.1    Uniprot ID   -
Organism   Bacillus velezensis strain CACC 316     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26321..36929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS00185 (GWK37_00190) - 27340..27846 (-) 507 WP_012117833.1 PTS sugar transporter subunit IIA -
  GWK37_RS00190 (GWK37_00195) - 27985..28398 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  GWK37_RS00195 (GWK37_00200) - 28428..28895 (-) 468 WP_105937586.1 YppG family protein -
  GWK37_RS00200 (GWK37_00205) - 29082..29264 (+) 183 WP_003153532.1 YppF family protein -
  GWK37_RS00205 (GWK37_00210) - 29304..29672 (-) 369 WP_029326132.1 YppE family protein -
  GWK37_RS00210 (GWK37_00215) - 29718..29963 (-) 246 WP_014418233.1 DUF5446 family protein -
  GWK37_RS00215 (GWK37_00220) sspM 30169..30273 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  GWK37_RS00220 (GWK37_00225) - 30317..31279 (-) 963 WP_115940592.1 DUF2515 domain-containing protein -
  GWK37_RS00225 (GWK37_00230) recU 31321..31929 (+) 609 WP_115940742.1 Holliday junction resolvase RecU Machinery gene
  GWK37_RS00230 (GWK37_00235) - 31968..34751 (+) 2784 WP_115940593.1 PBP1A family penicillin-binding protein -
  GWK37_RS00235 (GWK37_00240) - 34829..35320 (-) 492 WP_115940594.1 YpoC family protein -
  GWK37_RS00240 (GWK37_00245) nth 35317..35976 (-) 660 WP_115940595.1 endonuclease III -
  GWK37_RS00245 (GWK37_00250) dnaD 35995..36693 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.78 Da        Isoelectric Point: 9.5778

>NTDB_id=419195 GWK37_RS00225 WP_115940742.1 31321..31929(+) (recU) [Bacillus velezensis strain CACC 316]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=419195 GWK37_RS00225 WP_115940742.1 31321..31929(+) (recU) [Bacillus velezensis strain CACC 316]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment