Detailed information NTG0419145

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GSS20_RS12695
• Genome accession: NZ_CP047995
• Coordinates: 2736060..2737049 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 20150710009
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2731060..2742049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSS20_RS12680 (GSS20_13320)	recA	2731609..2732652 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
GSS20_RS12685 (GSS20_13325)	pncC	2732852..2733334 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
GSS20_RS12690 (GSS20_13330)	mutS	2733419..2735980 (+)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
GSS20_RS12695 (GSS20_13335)	rpoS	2736060..2737049 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GSS20_RS12700 (GSS20_13340)	-	2737130..2738053 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GSS20_RS12705 (GSS20_13345)	-	2738068..2738694 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GSS20_RS12710 (GSS20_13350)	surE	2738694..2739470 (-)	777	WP_025575295.1	5'/3'-nucleotidase SurE	-
GSS20_RS12715 (GSS20_13355)	truD	2739470..2740513 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
GSS20_RS12720 (GSS20_13360)	ispF	2740560..2741036 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GSS20_RS12725 (GSS20_13365)	ispD	2741054..2741758 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GSS20_RS12730 (GSS20_13370)	ftsB	2741760..2742041 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=419145 GSS20_RS12695 WP_005478537.1 2736060..2737049(-) (rpoS) [Vibrio parahaemolyticus strain 20150710009]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=419145 GSS20_RS12695 WP_005478537.1 2736060..2737049(-) (rpoS) [Vibrio parahaemolyticus strain 20150710009]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAC
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851