Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GSS20_RS12565 Genome accession   NZ_CP047995
Coordinates   2713947..2714465 (-) Length   172 a.a.
NCBI ID   WP_025508497.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2708947..2719465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS12540 (GSS20_13180) rimM 2709055..2709603 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  GSS20_RS12545 (GSS20_13185) rpsP 2709632..2709880 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GSS20_RS12550 (GSS20_13190) ffh 2710091..2711473 (-) 1383 WP_005462555.1 signal recognition particle protein -
  GSS20_RS12555 (GSS20_13195) - 2711686..2712480 (+) 795 WP_005462565.1 cytochrome C assembly family protein -
  GSS20_RS12560 (GSS20_13200) - 2712606..2713886 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  GSS20_RS12565 (GSS20_13205) luxS 2713947..2714465 (-) 519 WP_025508497.1 S-ribosylhomocysteine lyase Regulator
  GSS20_RS12570 (GSS20_13210) - 2714532..2715137 (-) 606 WP_015297256.1 hypothetical protein -
  GSS20_RS12575 (GSS20_13215) gshA 2715162..2716730 (-) 1569 WP_140391275.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19006.71 Da        Isoelectric Point: 4.7134

>NTDB_id=419142 GSS20_RS12565 WP_025508497.1 2713947..2714465(-) (luxS) [Vibrio parahaemolyticus strain 20150710009]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=419142 GSS20_RS12565 WP_025508497.1 2713947..2714465(-) (luxS) [Vibrio parahaemolyticus strain 20150710009]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAGCATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment