Detailed information NTG0419123

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GSS20_RS01205
• Genome accession: NZ_CP047995
• Coordinates: 257000..258007 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 20150710009
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 252000..263007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSS20_RS01175 (GSS20_01255)	zapB	252169..252411 (+)	243	WP_005481417.1	cell division protein ZapB	-
GSS20_RS01180 (GSS20_01260)	rraA	252516..253028 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GSS20_RS01185 (GSS20_01265)	-	253105..254022 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GSS20_RS01190 (GSS20_01270)	hslU	254207..255538 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GSS20_RS01195 (GSS20_01275)	hslV	255562..256113 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
GSS20_RS01200 (GSS20_01280)	ftsN	256278..256823 (-)	546	WP_005481405.1	cell division protein FtsN	-
GSS20_RS01205 (GSS20_01285)	cytR	257000..258007 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GSS20_RS01210 (GSS20_01290)	priA	258340..260544 (-)	2205	WP_140391433.1	primosomal protein N'	-
GSS20_RS01215 (GSS20_01300)	rpmE	260839..261060 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GSS20_RS01220 (GSS20_01305)	rpsJ	261518..261829 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GSS20_RS01225 (GSS20_01310)	rplC	261844..262473 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=419123 GSS20_RS01205 WP_005481416.1 257000..258007(-) (cytR) [Vibrio parahaemolyticus strain 20150710009]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=419123 GSS20_RS01205 WP_005481416.1 257000..258007(-) (cytR) [Vibrio parahaemolyticus strain 20150710009]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCGCAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCATTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904