Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   IBC04_RS06255 Genome accession   NZ_CP061020
Coordinates   1204354..1205034 (-) Length   226 a.a.
NCBI ID   WP_011681349.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24740     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1199354..1210034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS06235 (IBC04_06255) - 1199906..1200400 (-) 495 WP_002885314.1 YkgJ family cysteine cluster protein -
  IBC04_RS06240 (IBC04_06260) - 1200485..1202485 (-) 2001 WP_179970644.1 ABC transporter permease -
  IBC04_RS06245 (IBC04_06265) - 1202487..1203245 (-) 759 WP_207559906.1 ABC transporter ATP-binding protein -
  IBC04_RS06250 (IBC04_06270) - 1203390..1204364 (-) 975 WP_024009971.1 sensor histidine kinase -
  IBC04_RS06255 (IBC04_06275) braR 1204354..1205034 (-) 681 WP_011681349.1 response regulator transcription factor Regulator
  IBC04_RS06260 (IBC04_06280) - 1205485..1206065 (+) 581 Protein_1196 xanthine phosphoribosyltransferase -
  IBC04_RS06265 (IBC04_06285) - 1206065..1207332 (+) 1268 Protein_1197 nucleobase:cation symporter-2 family protein -
  IBC04_RS06270 (IBC04_06290) - 1207460..1208809 (+) 1350 WP_138496550.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26206.51 Da        Isoelectric Point: 4.8038

>NTDB_id=419076 IBC04_RS06255 WP_011681349.1 1204354..1205034(-) (braR) [Streptococcus thermophilus strain 24740]
MHKILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=419076 IBC04_RS06255 WP_011681349.1 1204354..1205034(-) (braR) [Streptococcus thermophilus strain 24740]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAGAAAATACTAGAACAGTGGGAGTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTCTTTTTGTAAAAGAAGAACCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCACTGGTGTCAGGAAATTCGGAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTTGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

51.835

96.46

0.5