Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   IBC04_RS05285 Genome accession   NZ_CP061020
Coordinates   1009550..1010032 (-) Length   160 a.a.
NCBI ID   WP_011226072.1    Uniprot ID   Q5M461
Organism   Streptococcus thermophilus strain 24740     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1004550..1015032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS05265 (IBC04_05285) pepT 1005031..1006254 (-) 1224 WP_014608366.1 peptidase T -
  IBC04_RS05270 (IBC04_05290) lepB 1006462..1007019 (-) 558 WP_011681191.1 signal peptidase I -
  IBC04_RS05275 (IBC04_05295) - 1007142..1008371 (-) 1230 WP_207559921.1 tetratricopeptide repeat protein -
  IBC04_RS05280 (IBC04_05300) - 1008361..1009539 (-) 1179 WP_138496689.1 AI-2E family transporter -
  IBC04_RS05285 (IBC04_05305) mutX 1009550..1010032 (-) 483 WP_011226072.1 8-oxo-dGTP diphosphatase Machinery gene
  IBC04_RS05290 (IBC04_05310) ftsX 1010188..1011117 (-) 930 WP_011681194.1 permease-like cell division protein FtsX -
  IBC04_RS05295 (IBC04_05315) ftsE 1011110..1011802 (-) 693 WP_002953094.1 cell division ATP-binding protein FtsE -
  IBC04_RS05305 (IBC04_05325) queG 1013041..1014159 (-) 1119 WP_138496688.1 tRNA epoxyqueuosine(34) reductase QueG -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18869.36 Da        Isoelectric Point: 4.7200

>NTDB_id=419066 IBC04_RS05285 WP_011226072.1 1009550..1010032(-) (mutX) [Streptococcus thermophilus strain 24740]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLEAGETPDECARREIFEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTDFEGKLISDEESREGTLEWVPYDQVLTKQTWEGDYEIFKWILEDKPFFSAKFSYDCNQNLIDKTVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=419066 IBC04_RS05285 WP_011226072.1 1009550..1010032(-) (mutX) [Streptococcus thermophilus strain 24740]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGGAAGGAGCTTCTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAAGCGGGAGAAACGCCTGACGAATGTGCTCGTCGTGAAA
TTTTTGAGGAAACTCATTTGACAGTGAAAAAGATGGACTTCAAAGGTATGATTACCTTCCCAGAATTTACTCCGGGCCAC
GATTGGTATACCTATGTCTTTAAGGTGACTGATTTTGAAGGAAAACTCATTTCTGATGAGGAATCTCGTGAAGGGACACT
TGAATGGGTACCATATGATCAGGTTTTAACTAAACAAACCTGGGAAGGTGACTATGAGATTTTTAAGTGGATTCTAGAAG
ATAAACCTTTCTTCTCTGCAAAATTTAGCTACGATTGTAACCAAAACTTGATAGATAAAACTGTAACATTTTATGATAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M461

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706