Detailed information NTG0419051

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GSS61_RS11685
• Genome accession: NZ_CP047985
• Coordinates: 2482628..2483617 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain HZ-52
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2477628..2488617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSS61_RS11670 (GSS61_12195)	recA	2478176..2479219 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
GSS61_RS11675 (GSS61_12200)	pncC	2479420..2479902 (-)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
GSS61_RS11680 (GSS61_12205)	mutS	2479987..2482548 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
GSS61_RS11685 (GSS61_12210)	rpoS	2482628..2483617 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GSS61_RS11690 (GSS61_12215)	-	2483698..2484621 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GSS61_RS11695 (GSS61_12220)	-	2484636..2485262 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GSS61_RS11700 (GSS61_12225)	surE	2485262..2486038 (-)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
GSS61_RS11705 (GSS61_12230)	truD	2486038..2487081 (-)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
GSS61_RS11710 (GSS61_12235)	ispF	2487128..2487604 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GSS61_RS11715 (GSS61_12240)	ispD	2487622..2488326 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GSS61_RS11720 (GSS61_12245)	ftsB	2488328..2488609 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=419051 GSS61_RS11685 WP_005478537.1 2482628..2483617(-) (rpoS) [Vibrio parahaemolyticus strain HZ-52]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=419051 GSS61_RS11685 WP_005478537.1 2482628..2483617(-) (rpoS) [Vibrio parahaemolyticus strain HZ-52]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851