Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   IBC08_RS04865 Genome accession   NZ_CP061019
Coordinates   934183..935253 (-) Length   356 a.a.
NCBI ID   WP_179971386.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929183..940253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS04850 (IBC08_04835) pstB 929908..930666 (+) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -
  IBC08_RS04855 (IBC08_04840) phoU 930694..931347 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  IBC08_RS04860 (IBC08_04845) - 931481..934021 (+) 2541 WP_207563280.1 M1 family metallopeptidase -
  IBC08_RS04865 (IBC08_04850) xerS 934183..935253 (-) 1071 WP_179971386.1 tyrosine recombinase XerS Machinery gene
  IBC08_RS04870 (IBC08_04855) - 935477..936466 (-) 990 WP_002950753.1 lipoate--protein ligase -
  IBC08_RS09960 - 936905..937324 (+) 420 WP_242682272.1 hypothetical protein -
  IBC08_RS04880 (IBC08_04865) - 937266..937706 (+) 441 WP_223899653.1 hypothetical protein -
  IBC08_RS04885 (IBC08_04870) glgP 937812..940076 (-) 2265 WP_014608303.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41501.63 Da        Isoelectric Point: 9.6822

>NTDB_id=418964 IBC08_RS04865 WP_179971386.1 934183..935253(-) (xerS) [Streptococcus thermophilus strain 24853]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKIVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=418964 IBC08_RS04865 WP_179971386.1 934183..935253(-) (xerS) [Streptococcus thermophilus strain 24853]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATTGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823

Multiple sequence alignment