Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IBC08_RS01340 Genome accession   NZ_CP061019
Coordinates   244102..244698 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain 24853     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 239102..249698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS01330 (IBC08_01320) - 240428..241684 (+) 1257 WP_207563314.1 ISL3-like element ISSth1 family transposase -
  IBC08_RS01335 (IBC08_01325) pbp1a 241760..244102 (-) 2343 WP_207560149.1 penicillin-binding protein PBP1A -
  IBC08_RS01340 (IBC08_01330) recU 244102..244698 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  IBC08_RS01345 (IBC08_01335) - 244775..245290 (+) 516 WP_116920094.1 DUF1273 domain-containing protein -
  IBC08_RS01350 (IBC08_01340) gpsB 245399..245731 (+) 333 WP_084830490.1 cell division regulator GpsB -
  IBC08_RS01360 (IBC08_01350) - 246264..247430 (+) 1167 WP_014607933.1 class I SAM-dependent RNA methyltransferase -
  IBC08_RS01365 (IBC08_01355) - 247433..249295 (+) 1863 WP_014607934.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=418934 IBC08_RS01340 WP_002949408.1 244102..244698(-) (recU) [Streptococcus thermophilus strain 24853]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=418934 IBC08_RS01340 WP_002949408.1 244102..244698(-) (recU) [Streptococcus thermophilus strain 24853]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAGGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51